Hb_000258_030

Information

Type -
Description -
Location Contig258: 12041-12771
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26782: 11884-14062 , PASA_asmbl_26783: 12014-12575
cDNA
(Sanger)
(ID:Location)		 041_O11.ab1: 12209-13926

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_030 0.0 - - -
2 Hb_175976_010 0.1453713084 - - -
3 Hb_000127_090 0.1475245288 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006995_040 0.1481935425 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
5 Hb_001017_060 0.1597448058 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_002284_050 0.1620083656 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
7 Hb_008221_110 0.1636859773 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
8 Hb_080601_020 0.1637300758 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
9 Hb_000419_130 0.1640306496 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
10 Hb_001610_130 0.1645457604 - - 40S ribosomal protein S30 [Medicago truncatula]
11 Hb_014834_140 0.1653903432 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
12 Hb_003405_060 0.165936257 - - -
13 Hb_140543_010 0.1700657163 - - -
14 Hb_000493_010 0.1714063585 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
15 Hb_000710_070 0.1732284161 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
16 Hb_000656_340 0.1751468627 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
17 Hb_172706_030 0.178649317 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
18 Hb_020035_020 0.1850148921 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
19 Hb_042710_010 0.1866841376 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
20 Hb_000155_180 0.1886488914 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000258_030 Hb_000258_030 Hb_175976_010 Hb_175976_010 Hb_000258_030--Hb_175976_010 Hb_000127_090 Hb_000127_090 Hb_000258_030--Hb_000127_090 Hb_006995_040 Hb_006995_040 Hb_000258_030--Hb_006995_040 Hb_001017_060 Hb_001017_060 Hb_000258_030--Hb_001017_060 Hb_002284_050 Hb_002284_050 Hb_000258_030--Hb_002284_050 Hb_008221_110 Hb_008221_110 Hb_000258_030--Hb_008221_110 Hb_010368_030 Hb_010368_030 Hb_175976_010--Hb_010368_030 Hb_175976_010--Hb_008221_110 Hb_007534_020 Hb_007534_020 Hb_175976_010--Hb_007534_020 Hb_000120_190 Hb_000120_190 Hb_175976_010--Hb_000120_190 Hb_175976_010--Hb_000127_090 Hb_175976_010--Hb_001017_060 Hb_000127_090--Hb_008221_110 Hb_166480_010 Hb_166480_010 Hb_000127_090--Hb_166480_010 Hb_106005_010 Hb_106005_010 Hb_000127_090--Hb_106005_010 Hb_000127_090--Hb_000120_190 Hb_182964_010 Hb_182964_010 Hb_006995_040--Hb_182964_010 Hb_000215_200 Hb_000215_200 Hb_006995_040--Hb_000215_200 Hb_000656_340 Hb_000656_340 Hb_006995_040--Hb_000656_340 Hb_006995_040--Hb_002284_050 Hb_000710_070 Hb_000710_070 Hb_006995_040--Hb_000710_070 Hb_014834_140 Hb_014834_140 Hb_006995_040--Hb_014834_140 Hb_001017_060--Hb_008221_110 Hb_001017_060--Hb_007534_020 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_011644_010 Hb_011644_010 Hb_001017_060--Hb_011644_010 Hb_002284_050--Hb_000215_200 Hb_001504_080 Hb_001504_080 Hb_002284_050--Hb_001504_080 Hb_002284_050--Hb_000710_070 Hb_080601_020 Hb_080601_020 Hb_002284_050--Hb_080601_020 Hb_002660_050 Hb_002660_050 Hb_002284_050--Hb_002660_050 Hb_172706_030 Hb_172706_030 Hb_002284_050--Hb_172706_030 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_008221_110--Hb_010368_030 Hb_008221_110--Hb_007534_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.599238 0 0.193937 1.46701 0.365968 3.03012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28757 2.92255 0.67487 0.20233 0.368399

CAGE analysis