Hb_000258_080

Information

Type -
Description -
Location Contig258: 59851-63818
Sequence    

Annotation

kegg
ID rcu:RCOM_1057860
description Brassinosteroid LRR receptor kinase precursor, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_002528692.1
description Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
swissprot
ID Q9LZV7
description Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana GN=PXC2 PE=2 SV=1
trembl
ID B9SRS9
description Brassinosteroid LRR receptor kinase, putative OS=Ricinus communis GN=RCOM_1057860 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probably inactive leucine-rich repeat receptor-like protein kinase at3g28040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26795: 62485-63362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_080 0.0 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
2 Hb_135810_010 0.118675627 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
3 Hb_012390_010 0.1260146708 - - pectate lyase 1 [Hevea brasiliensis]
4 Hb_000258_430 0.128391904 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_005167_040 0.1312059549 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
6 Hb_057183_040 0.1424846763 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
7 Hb_000031_030 0.1435138354 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
8 Hb_001696_030 0.143963883 - - cytochrome P450, putative [Ricinus communis]
9 Hb_007766_010 0.1443157177 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
10 Hb_001476_100 0.1449117183 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000028_470 0.1455269327 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
12 Hb_002027_220 0.1474656813 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_023988_020 0.1506998413 - - PREDICTED: transmembrane protein 19 [Prunus mume]
14 Hb_003060_070 0.15302694 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_006070_010 0.1534762193 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
16 Hb_000416_100 0.1542364773 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
17 Hb_002716_150 0.1547565712 - - starch synthase isoform I [Manihot esculenta]
18 Hb_001047_020 0.1551916027 - - -
19 Hb_000270_420 0.1559804016 - - actin binding protein, putative [Ricinus communis]
20 Hb_000084_310 0.1561683596 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000258_080 Hb_000258_080 Hb_135810_010 Hb_135810_010 Hb_000258_080--Hb_135810_010 Hb_012390_010 Hb_012390_010 Hb_000258_080--Hb_012390_010 Hb_000258_430 Hb_000258_430 Hb_000258_080--Hb_000258_430 Hb_005167_040 Hb_005167_040 Hb_000258_080--Hb_005167_040 Hb_057183_040 Hb_057183_040 Hb_000258_080--Hb_057183_040 Hb_000031_030 Hb_000031_030 Hb_000258_080--Hb_000031_030 Hb_002716_150 Hb_002716_150 Hb_135810_010--Hb_002716_150 Hb_002027_220 Hb_002027_220 Hb_135810_010--Hb_002027_220 Hb_031042_040 Hb_031042_040 Hb_135810_010--Hb_031042_040 Hb_011282_030 Hb_011282_030 Hb_135810_010--Hb_011282_030 Hb_000529_160 Hb_000529_160 Hb_135810_010--Hb_000529_160 Hb_000120_240 Hb_000120_240 Hb_012390_010--Hb_000120_240 Hb_012390_010--Hb_002027_220 Hb_004449_220 Hb_004449_220 Hb_012390_010--Hb_004449_220 Hb_012390_010--Hb_057183_040 Hb_012390_010--Hb_002716_150 Hb_002450_050 Hb_002450_050 Hb_000258_430--Hb_002450_050 Hb_006551_010 Hb_006551_010 Hb_000258_430--Hb_006551_010 Hb_001017_090 Hb_001017_090 Hb_000258_430--Hb_001017_090 Hb_000028_470 Hb_000028_470 Hb_000258_430--Hb_000028_470 Hb_010174_130 Hb_010174_130 Hb_000258_430--Hb_010174_130 Hb_003404_030 Hb_003404_030 Hb_000258_430--Hb_003404_030 Hb_001696_030 Hb_001696_030 Hb_005167_040--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_005167_040--Hb_023988_020 Hb_007766_010 Hb_007766_010 Hb_005167_040--Hb_007766_010 Hb_005167_040--Hb_000031_030 Hb_000082_080 Hb_000082_080 Hb_005167_040--Hb_000082_080 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_057183_040--Hb_000120_240 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_000364_010 Hb_000364_010 Hb_000031_030--Hb_000364_010 Hb_000204_040 Hb_000204_040 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_006487_050 Hb_006487_050 Hb_000031_030--Hb_006487_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.723 2.2729 1.50643 12.5981 15.0577 37.4178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1095 12.1705 22.2529 2.21314 4.20877

CAGE analysis