Hb_000258_120

Information

Type -
Description -
Location Contig258: 123044-127300
Sequence    

Annotation

kegg
ID rcu:RCOM_0836410
description membrane associated ring finger 1,8, putative
nr
ID XP_012067641.1
description PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID A0A067L1Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15605 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26799: 123271-127231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_120 0.0 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
2 Hb_002326_020 0.0627636473 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
3 Hb_000034_160 0.0975770773 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
4 Hb_001662_030 0.1008066969 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
5 Hb_031527_090 0.1018091396 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
6 Hb_000283_130 0.1041465409 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
7 Hb_000457_050 0.108688286 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
8 Hb_009252_100 0.1135880596 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
9 Hb_001301_320 0.1148656761 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
10 Hb_002043_090 0.1168443776 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
11 Hb_000953_030 0.118160881 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
12 Hb_000406_240 0.1185524622 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
13 Hb_004017_040 0.1191641726 - - kinetochore protein nuf2, putative [Ricinus communis]
14 Hb_004635_050 0.1198832028 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_005883_010 0.1200645858 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004032_180 0.1200744184 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
17 Hb_000261_220 0.120275695 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
18 Hb_000331_160 0.1212354249 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
19 Hb_000594_040 0.1214045449 - - hypothetical protein L484_013922 [Morus notabilis]
20 Hb_011386_040 0.1215586626 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_120 Hb_000258_120 Hb_002326_020 Hb_002326_020 Hb_000258_120--Hb_002326_020 Hb_000034_160 Hb_000034_160 Hb_000258_120--Hb_000034_160 Hb_001662_030 Hb_001662_030 Hb_000258_120--Hb_001662_030 Hb_031527_090 Hb_031527_090 Hb_000258_120--Hb_031527_090 Hb_000283_130 Hb_000283_130 Hb_000258_120--Hb_000283_130 Hb_000457_050 Hb_000457_050 Hb_000258_120--Hb_000457_050 Hb_003680_230 Hb_003680_230 Hb_002326_020--Hb_003680_230 Hb_000331_160 Hb_000331_160 Hb_002326_020--Hb_000331_160 Hb_009252_100 Hb_009252_100 Hb_002326_020--Hb_009252_100 Hb_006816_050 Hb_006816_050 Hb_002326_020--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_002326_020--Hb_004635_050 Hb_007403_050 Hb_007403_050 Hb_000034_160--Hb_007403_050 Hb_004032_180 Hb_004032_180 Hb_000034_160--Hb_004032_180 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000034_160--Hb_000457_050 Hb_010738_010 Hb_010738_010 Hb_000034_160--Hb_010738_010 Hb_001662_030--Hb_000034_160 Hb_001189_130 Hb_001189_130 Hb_001662_030--Hb_001189_130 Hb_075449_020 Hb_075449_020 Hb_001662_030--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_001662_030--Hb_000390_220 Hb_001662_030--Hb_000283_130 Hb_000336_110 Hb_000336_110 Hb_031527_090--Hb_000336_110 Hb_011909_060 Hb_011909_060 Hb_031527_090--Hb_011909_060 Hb_031711_010 Hb_031711_010 Hb_031527_090--Hb_031711_010 Hb_000264_080 Hb_000264_080 Hb_031527_090--Hb_000264_080 Hb_031527_090--Hb_000034_160 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000283_130--Hb_000457_050 Hb_000283_130--Hb_004635_050 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.7299 72.8365 42.8543 25.934 56.8216 44.3793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2957 20.6237 19.1 30.2869 4.96304

CAGE analysis