Hb_000258_130

Information

Type -
Description -
Location Contig258: 129705-132860
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26805: 131467-131602
cDNA
(Sanger)
(ID:Location)		 043_A03.ab1: 132346-133088 , 046_H21.ab1: 132226-132417 , 047_A05.ab1: 132599-133367 , 052_N08.ab1: 132374-133088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_130 0.0 - - -
2 Hb_000922_150 0.1199370864 - - -
3 Hb_017438_020 0.1202812611 - - -
4 Hb_000940_040 0.1218132785 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
5 Hb_179511_010 0.1237825637 - - -
6 Hb_010068_030 0.1254691122 - - aconitase, putative [Ricinus communis]
7 Hb_000422_140 0.1263238216 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
8 Hb_004374_050 0.1335413666 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001623_580 0.1339441282 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
10 Hb_003097_190 0.1371099763 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
11 Hb_001754_170 0.1377466243 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
12 Hb_006816_120 0.1398750852 - - Nicotianamine synthase, putative [Ricinus communis]
13 Hb_004656_060 0.1412795635 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
14 Hb_004374_150 0.1456365916 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
15 Hb_007747_060 0.145992566 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
16 Hb_002942_220 0.1465693307 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
17 Hb_000152_560 0.1478734605 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
18 Hb_000236_280 0.1480149182 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
19 Hb_000270_140 0.1485773905 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
20 Hb_005895_040 0.1497094874 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]

Gene co-expression network

sample Hb_000258_130 Hb_000258_130 Hb_000922_150 Hb_000922_150 Hb_000258_130--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000258_130--Hb_017438_020 Hb_000940_040 Hb_000940_040 Hb_000258_130--Hb_000940_040 Hb_179511_010 Hb_179511_010 Hb_000258_130--Hb_179511_010 Hb_010068_030 Hb_010068_030 Hb_000258_130--Hb_010068_030 Hb_000422_140 Hb_000422_140 Hb_000258_130--Hb_000422_140 Hb_000922_150--Hb_017438_020 Hb_000300_380 Hb_000300_380 Hb_000922_150--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_000922_150--Hb_004374_050 Hb_000183_070 Hb_000183_070 Hb_000922_150--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_000922_150--Hb_005015_010 Hb_017438_020--Hb_000300_380 Hb_002942_220 Hb_002942_220 Hb_017438_020--Hb_002942_220 Hb_004241_070 Hb_004241_070 Hb_017438_020--Hb_004241_070 Hb_017168_010 Hb_017168_010 Hb_017438_020--Hb_017168_010 Hb_007441_070 Hb_007441_070 Hb_000940_040--Hb_007441_070 Hb_019871_020 Hb_019871_020 Hb_000940_040--Hb_019871_020 Hb_011644_020 Hb_011644_020 Hb_000940_040--Hb_011644_020 Hb_004656_060 Hb_004656_060 Hb_000940_040--Hb_004656_060 Hb_000270_140 Hb_000270_140 Hb_000940_040--Hb_000270_140 Hb_000608_340 Hb_000608_340 Hb_000940_040--Hb_000608_340 Hb_003581_110 Hb_003581_110 Hb_179511_010--Hb_003581_110 Hb_000392_280 Hb_000392_280 Hb_179511_010--Hb_000392_280 Hb_004032_050 Hb_004032_050 Hb_179511_010--Hb_004032_050 Hb_009801_010 Hb_009801_010 Hb_179511_010--Hb_009801_010 Hb_001754_170 Hb_001754_170 Hb_179511_010--Hb_001754_170 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_005895_040 Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_000422_140--Hb_004656_060 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000365_140 Hb_000365_140 Hb_000422_140--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000422_140--Hb_002477_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.312 13.3524 4.70974 3.80351 59.387 24.8456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.973 17.1589 5.81188 6.3375 7.69112

CAGE analysis