Hb_000258_140

Information

Type -
Description -
Location Contig258: 130339-132888
Sequence    

Annotation

kegg
ID rcu:RCOM_0836400
description hypothetical protein
nr
ID XP_002522434.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6IWA9
description CLAVATA3/ESR (CLE)-related protein 45 OS=Arabidopsis thaliana GN=CLE45 PE=2 SV=1
trembl
ID B9S8W5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26802: 129361-130046 , PASA_asmbl_26803: 130377-130741 , PASA_asmbl_26804: 130968-131325 , PASA_asmbl_26806: 132224-133367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000661_070 0.1513696645 - - -
3 Hb_000347_330 0.158272477 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
4 Hb_000212_290 0.1585244608 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
5 Hb_009680_020 0.1592729563 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
6 Hb_007973_010 0.163907193 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
7 Hb_019040_030 0.1712437959 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
8 Hb_000649_140 0.1731973181 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
9 Hb_002477_010 0.1751313337 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002481_060 0.1776892846 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
11 Hb_012627_040 0.1779639086 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
12 Hb_001221_340 0.1787225005 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
13 Hb_099136_010 0.1791456227 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
14 Hb_003020_260 0.1793173715 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
15 Hb_003106_100 0.1812570083 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
16 Hb_055619_010 0.1818427561 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
17 Hb_007943_200 0.1845714323 - - Uncharacterized protein isoform 2 [Theobroma cacao]
18 Hb_006683_070 0.1852496422 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
19 Hb_004897_010 0.1854238707 - - -
20 Hb_100886_010 0.1869313682 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_140 Hb_000258_140 Hb_000661_070 Hb_000661_070 Hb_000258_140--Hb_000661_070 Hb_000347_330 Hb_000347_330 Hb_000258_140--Hb_000347_330 Hb_000212_290 Hb_000212_290 Hb_000258_140--Hb_000212_290 Hb_009680_020 Hb_009680_020 Hb_000258_140--Hb_009680_020 Hb_007973_010 Hb_007973_010 Hb_000258_140--Hb_007973_010 Hb_019040_030 Hb_019040_030 Hb_000258_140--Hb_019040_030 Hb_001221_340 Hb_001221_340 Hb_000661_070--Hb_001221_340 Hb_000661_070--Hb_007973_010 Hb_001452_210 Hb_001452_210 Hb_000661_070--Hb_001452_210 Hb_005048_040 Hb_005048_040 Hb_000661_070--Hb_005048_040 Hb_004897_010 Hb_004897_010 Hb_000661_070--Hb_004897_010 Hb_000347_330--Hb_000212_290 Hb_000184_100 Hb_000184_100 Hb_000347_330--Hb_000184_100 Hb_024758_010 Hb_024758_010 Hb_000347_330--Hb_024758_010 Hb_001284_030 Hb_001284_030 Hb_000347_330--Hb_001284_030 Hb_023711_010 Hb_023711_010 Hb_000347_330--Hb_023711_010 Hb_001222_080 Hb_001222_080 Hb_000212_290--Hb_001222_080 Hb_007928_030 Hb_007928_030 Hb_000212_290--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_000212_290--Hb_005307_050 Hb_000483_300 Hb_000483_300 Hb_000212_290--Hb_000483_300 Hb_001353_010 Hb_001353_010 Hb_000212_290--Hb_001353_010 Hb_000431_070 Hb_000431_070 Hb_000212_290--Hb_000431_070 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_000733_190 Hb_000733_190 Hb_009680_020--Hb_000733_190 Hb_002477_010 Hb_002477_010 Hb_009680_020--Hb_002477_010 Hb_007973_010--Hb_001221_340 Hb_052764_110 Hb_052764_110 Hb_007973_010--Hb_052764_110 Hb_004317_060 Hb_004317_060 Hb_007973_010--Hb_004317_060 Hb_008447_040 Hb_008447_040 Hb_007973_010--Hb_008447_040 Hb_004785_080 Hb_004785_080 Hb_007973_010--Hb_004785_080 Hb_000270_390 Hb_000270_390 Hb_007973_010--Hb_000270_390 Hb_000914_100 Hb_000914_100 Hb_019040_030--Hb_000914_100 Hb_001898_180 Hb_001898_180 Hb_019040_030--Hb_001898_180 Hb_007632_170 Hb_007632_170 Hb_019040_030--Hb_007632_170 Hb_000077_150 Hb_000077_150 Hb_019040_030--Hb_000077_150 Hb_000156_210 Hb_000156_210 Hb_019040_030--Hb_000156_210 Hb_001214_050 Hb_001214_050 Hb_019040_030--Hb_001214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0869812 0.199658 0.167654 0.554001 0.0846204 0.452702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.706829 0.872938 0.138795 0.455622 0.921459

CAGE analysis