Hb_000258_170

Information

Type -
Description -
Location Contig258: 147002-153221
Sequence    

Annotation

kegg
ID rcu:RCOM_0836370
description hypothetical protein
nr
ID XP_012067637.1
description PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
swissprot
ID P40590
description 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
trembl
ID B9S8W2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836370 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26813: 147132-147531 , PASA_asmbl_26814: 147540-147952 , PASA_asmbl_26816: 148466-149926 , PASA_asmbl_26817: 151136-153160
cDNA
(Sanger)
(ID:Location)		 002_O09.ab1: 151134-153104 , 020_F05.ab1: 151136-153132 , 046_M22.ab1: 151136-153158

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_170 0.0 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
2 Hb_000608_370 0.0683136764 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_021409_030 0.0837371843 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
4 Hb_138585_060 0.0861682 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
5 Hb_005511_160 0.0908073953 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
6 Hb_000788_090 0.0914999222 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
7 Hb_001047_230 0.0916758105 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000479_010 0.091731566 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
9 Hb_129204_030 0.0931695026 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
10 Hb_034406_020 0.0943981811 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
11 Hb_006031_020 0.0988747432 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
12 Hb_007416_030 0.0993117614 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
13 Hb_001269_630 0.0999283349 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
14 Hb_004375_140 0.1009086418 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
15 Hb_003656_070 0.1009307512 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
16 Hb_012753_160 0.1010321693 - - ara4-interacting protein, putative [Ricinus communis]
17 Hb_002454_030 0.1023333208 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
18 Hb_000072_080 0.1031574573 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
19 Hb_143766_050 0.1073268097 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
20 Hb_000167_140 0.1102506282 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_170 Hb_000258_170 Hb_000608_370 Hb_000608_370 Hb_000258_170--Hb_000608_370 Hb_021409_030 Hb_021409_030 Hb_000258_170--Hb_021409_030 Hb_138585_060 Hb_138585_060 Hb_000258_170--Hb_138585_060 Hb_005511_160 Hb_005511_160 Hb_000258_170--Hb_005511_160 Hb_000788_090 Hb_000788_090 Hb_000258_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_000258_170--Hb_001047_230 Hb_129204_030 Hb_129204_030 Hb_000608_370--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000608_370--Hb_000788_090 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_021409_030--Hb_138585_060 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_011628_040 Hb_011628_040 Hb_005511_160--Hb_011628_040 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_005511_160--Hb_007416_030 Hb_000788_090--Hb_007416_030 Hb_000788_090--Hb_001047_230 Hb_000788_090--Hb_003656_070 Hb_002110_120 Hb_002110_120 Hb_000788_090--Hb_002110_120 Hb_008173_090 Hb_008173_090 Hb_000788_090--Hb_008173_090 Hb_001047_230--Hb_003656_070 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_001047_230--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4805 13.7455 13.0774 12.2726 27.6925 16.5591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5291 69.1537 42.9141 10.4257 8.96778

CAGE analysis