Hb_000258_230

Information

Type -
Description -
Location Contig258: 195012-196541
Sequence    

Annotation

kegg
ID rcu:RCOM_0836100
description hypothetical protein
nr
ID XP_002522424.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SWI1
description Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2
trembl
ID B9S8V5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26822: 194754-194959 , PASA_asmbl_26823: 195202-196282 , PASA_asmbl_26824: 196287-196850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009771_040 0.0789783635 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
3 Hb_002250_140 0.0820659401 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
4 Hb_007103_020 0.0893297379 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
5 Hb_152277_010 0.0897359753 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
6 Hb_026050_010 0.092712387 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000201_010 0.0991131386 - - unnamed protein product [Vitis vinifera]
8 Hb_005790_010 0.1025285715 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
9 Hb_002168_070 0.1039378367 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
10 Hb_002066_010 0.1154237797 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
11 Hb_000270_750 0.118122303 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
12 Hb_002043_070 0.1193856481 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
13 Hb_000983_130 0.1224682606 - - transcription factor, putative [Ricinus communis]
14 Hb_000179_060 0.1238504915 - - hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
15 Hb_001405_170 0.126572393 - - aspartyl protease family protein [Populus trichocarpa]
16 Hb_005211_210 0.1267628713 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
17 Hb_004102_200 0.1268342304 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
18 Hb_010174_200 0.1279499921 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
19 Hb_173107_020 0.1283073112 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
20 Hb_027892_050 0.1306681704 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000258_230 Hb_000258_230 Hb_009771_040 Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000258_230--Hb_002250_140 Hb_007103_020 Hb_007103_020 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_002250_140 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_002250_140--Hb_026050_010 Hb_002250_140--Hb_173107_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_007103_020--Hb_009771_040 Hb_007103_020--Hb_152277_010 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010 Hb_000983_130 Hb_000983_130 Hb_152277_010--Hb_000983_130 Hb_004102_200 Hb_004102_200 Hb_152277_010--Hb_004102_200 Hb_152277_010--Hb_005790_010 Hb_152277_010--Hb_009771_040 Hb_000574_230 Hb_000574_230 Hb_026050_010--Hb_000574_230 Hb_007257_070 Hb_007257_070 Hb_026050_010--Hb_007257_070 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_005211_210 Hb_005211_210 Hb_000201_010--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_000201_010--Hb_008689_010 Hb_002193_080 Hb_002193_080 Hb_000201_010--Hb_002193_080 Hb_002043_070 Hb_002043_070 Hb_000201_010--Hb_002043_070 Hb_003050_330 Hb_003050_330 Hb_000201_010--Hb_003050_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0402069 3.4733 1.29813 5.01859 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0610523 0.024016 0 0.220424 3.46959

CAGE analysis