Hb_000258_270

Information

Type -
Description -
Location Contig258: 226523-230670
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10320g
description POPTRDRAFT_566300; cullin family protein
nr
ID XP_012067623.1
description PREDICTED: cullin-3A [Jatropha curcas]
swissprot
ID Q9ZVH4
description Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1
trembl
ID A0A067L1V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15590 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26829: 226367-230540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_270 0.0 - - PREDICTED: cullin-3A [Jatropha curcas]
2 Hb_004052_090 0.0470652213 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
3 Hb_000836_040 0.0675246556 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_000567_120 0.0725099487 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
5 Hb_001140_220 0.0788370931 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000003_250 0.0799876455 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_016901_010 0.080056698 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
8 Hb_004724_080 0.081118239 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000206_240 0.0817331739 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000138_110 0.0832977445 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
11 Hb_008695_100 0.0838806122 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
12 Hb_000047_030 0.0860955553 - - tfiif-alpha, putative [Ricinus communis]
13 Hb_085863_030 0.0864533317 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
14 Hb_002105_040 0.0870224916 - - -
15 Hb_007483_100 0.0882106301 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
16 Hb_009178_030 0.0884766594 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001959_190 0.0899422203 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
18 Hb_000723_080 0.090046882 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
19 Hb_011242_040 0.0906394348 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_004846_070 0.090724441 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]

Gene co-expression network

sample Hb_000258_270 Hb_000258_270 Hb_004052_090 Hb_004052_090 Hb_000258_270--Hb_004052_090 Hb_000836_040 Hb_000836_040 Hb_000258_270--Hb_000836_040 Hb_000567_120 Hb_000567_120 Hb_000258_270--Hb_000567_120 Hb_001140_220 Hb_001140_220 Hb_000258_270--Hb_001140_220 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010 Hb_000206_240 Hb_000206_240 Hb_004052_090--Hb_000206_240 Hb_007483_100 Hb_007483_100 Hb_004052_090--Hb_007483_100 Hb_004052_090--Hb_000836_040 Hb_003371_090 Hb_003371_090 Hb_004052_090--Hb_003371_090 Hb_002218_010 Hb_002218_010 Hb_004052_090--Hb_002218_010 Hb_030565_030 Hb_030565_030 Hb_000836_040--Hb_030565_030 Hb_004724_080 Hb_004724_080 Hb_000836_040--Hb_004724_080 Hb_000836_040--Hb_000003_250 Hb_000047_030 Hb_000047_030 Hb_000836_040--Hb_000047_030 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_011242_040 Hb_011242_040 Hb_001140_220--Hb_011242_040 Hb_002235_280 Hb_002235_280 Hb_001140_220--Hb_002235_280 Hb_001140_220--Hb_008695_100 Hb_001140_220--Hb_000723_080 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3967 21.5771 8.73111 22.5391 20.6622 29.7485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6559 31.6556 56.6616 17.2166 24.1046

CAGE analysis