Hb_000258_280

Information

Type -
Description -
Location Contig258: 236285-240054
Sequence    

Annotation

kegg
ID rcu:RCOM_0487940
description Nuclear import protein mog1, putative
nr
ID XP_012067622.1
description PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
swissprot
ID Q54ML6
description Probable ran guanine nucleotide release factor OS=Dictyostelium discoideum GN=mog1 PE=3 SV=1
trembl
ID A0A067KYE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15589 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26830: 236510-240027 , PASA_asmbl_26831: 237325-237681 , PASA_asmbl_26832: 237722-238158
cDNA
(Sanger)
(ID:Location)		 010_I09.ab1: 236510-239772

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_280 0.0 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
2 Hb_002344_070 0.0690106979 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
3 Hb_003549_020 0.1013366264 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007497_030 0.1021665407 - - mutt domain protein, putative [Ricinus communis]
5 Hb_001386_050 0.1208000076 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
6 Hb_000878_020 0.1240196693 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
7 Hb_004735_050 0.1245543069 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
8 Hb_097007_010 0.1249846919 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
9 Hb_000853_240 0.1256636053 - - -
10 Hb_008948_050 0.1286957653 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
11 Hb_002909_130 0.1366359116 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_006588_080 0.1368922858 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
13 Hb_043623_010 0.1373012825 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
14 Hb_000042_260 0.1373470725 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
15 Hb_000203_020 0.1389448349 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
16 Hb_004007_180 0.1397266985 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_000236_460 0.1397462553 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
18 Hb_002876_360 0.1400449063 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
19 Hb_012053_010 0.1406511266 - - srpk, putative [Ricinus communis]
20 Hb_002320_060 0.1427120423 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_000258_280 Hb_000258_280 Hb_002344_070 Hb_002344_070 Hb_000258_280--Hb_002344_070 Hb_003549_020 Hb_003549_020 Hb_000258_280--Hb_003549_020 Hb_007497_030 Hb_007497_030 Hb_000258_280--Hb_007497_030 Hb_001386_050 Hb_001386_050 Hb_000258_280--Hb_001386_050 Hb_000878_020 Hb_000878_020 Hb_000258_280--Hb_000878_020 Hb_004735_050 Hb_004735_050 Hb_000258_280--Hb_004735_050 Hb_002344_070--Hb_000878_020 Hb_002344_070--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_002344_070--Hb_008948_050 Hb_002344_070--Hb_007497_030 Hb_012053_010 Hb_012053_010 Hb_002344_070--Hb_012053_010 Hb_000236_460 Hb_000236_460 Hb_003549_020--Hb_000236_460 Hb_000645_190 Hb_000645_190 Hb_003549_020--Hb_000645_190 Hb_097007_010 Hb_097007_010 Hb_003549_020--Hb_097007_010 Hb_002320_060 Hb_002320_060 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_003549_020--Hb_007497_030 Hb_000331_700 Hb_000331_700 Hb_007497_030--Hb_000331_700 Hb_076626_010 Hb_076626_010 Hb_007497_030--Hb_076626_010 Hb_002909_130 Hb_002909_130 Hb_007497_030--Hb_002909_130 Hb_001863_400 Hb_001863_400 Hb_007497_030--Hb_001863_400 Hb_001386_050--Hb_008948_050 Hb_001386_050--Hb_000878_020 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_000878_020--Hb_006588_080 Hb_000110_170 Hb_000110_170 Hb_000878_020--Hb_000110_170 Hb_000878_020--Hb_008948_050 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_004735_050--Hb_006588_080 Hb_004735_050--Hb_004007_180 Hb_000635_080 Hb_000635_080 Hb_004735_050--Hb_000635_080 Hb_004735_050--Hb_000878_020 Hb_002316_120 Hb_002316_120 Hb_004735_050--Hb_002316_120 Hb_008748_020 Hb_008748_020 Hb_004735_050--Hb_008748_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4558 4.44328 8.12922 11.7545 12.7598 19.8904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.356 137.406 31.2502 8.98326 4.74392

CAGE analysis