Hb_000258_290

Information

Type transcription factor
Description TF Family: TCP
Location Contig258: 249204-250391
Sequence    

Annotation

kegg
ID rcu:RCOM_0835810
description hypothetical protein
nr
ID XP_012067620.1
description PREDICTED: transcription factor TCP15 [Jatropha curcas]
swissprot
ID Q9C9L2
description Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1
trembl
ID A0A067KY96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15588 PE=4 SV=1
Gene Ontology
ID GO:0006355
description transcription factor tcp15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_290 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
2 Hb_000091_060 0.1398976931 - - PREDICTED: galactose oxidase [Jatropha curcas]
3 Hb_074197_020 0.1429805617 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
4 Hb_005843_160 0.1618415235 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
5 Hb_009485_020 0.1823713328 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
6 Hb_000424_150 0.1833745003 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
7 Hb_002498_050 0.1953938981 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
8 Hb_000366_190 0.1966959258 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
9 Hb_000030_240 0.1979901828 - - zinc finger protein, putative [Ricinus communis]
10 Hb_004223_290 0.1993173674 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
11 Hb_004545_170 0.2002302539 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
12 Hb_004657_090 0.203731018 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
13 Hb_000853_260 0.2046406235 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
14 Hb_003376_260 0.2076186531 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
15 Hb_000008_270 0.208667816 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
16 Hb_004374_080 0.2108404132 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
17 Hb_002301_310 0.2117964709 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
18 Hb_011953_030 0.2118280611 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
19 Hb_000500_080 0.2129022221 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_029866_100 0.2134852776 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_290 Hb_000258_290 Hb_000091_060 Hb_000091_060 Hb_000258_290--Hb_000091_060 Hb_074197_020 Hb_074197_020 Hb_000258_290--Hb_074197_020 Hb_005843_160 Hb_005843_160 Hb_000258_290--Hb_005843_160 Hb_009485_020 Hb_009485_020 Hb_000258_290--Hb_009485_020 Hb_000424_150 Hb_000424_150 Hb_000258_290--Hb_000424_150 Hb_002498_050 Hb_002498_050 Hb_000258_290--Hb_002498_050 Hb_000091_060--Hb_005843_160 Hb_000091_060--Hb_009485_020 Hb_000091_060--Hb_074197_020 Hb_000091_060--Hb_002498_050 Hb_029866_100 Hb_029866_100 Hb_000091_060--Hb_029866_100 Hb_002814_060 Hb_002814_060 Hb_074197_020--Hb_002814_060 Hb_074197_020--Hb_000424_150 Hb_004223_290 Hb_004223_290 Hb_074197_020--Hb_004223_290 Hb_003376_260 Hb_003376_260 Hb_074197_020--Hb_003376_260 Hb_000630_030 Hb_000630_030 Hb_074197_020--Hb_000630_030 Hb_006831_070 Hb_006831_070 Hb_005843_160--Hb_006831_070 Hb_091761_010 Hb_091761_010 Hb_005843_160--Hb_091761_010 Hb_008511_060 Hb_008511_060 Hb_005843_160--Hb_008511_060 Hb_005843_160--Hb_074197_020 Hb_003858_040 Hb_003858_040 Hb_009485_020--Hb_003858_040 Hb_001396_280 Hb_001396_280 Hb_009485_020--Hb_001396_280 Hb_009485_020--Hb_029866_100 Hb_000733_050 Hb_000733_050 Hb_009485_020--Hb_000733_050 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_130323_010 Hb_130323_010 Hb_009485_020--Hb_130323_010 Hb_000424_150--Hb_002814_060 Hb_002301_310 Hb_002301_310 Hb_000424_150--Hb_002301_310 Hb_000482_150 Hb_000482_150 Hb_000424_150--Hb_000482_150 Hb_000424_150--Hb_003376_260 Hb_003471_020 Hb_003471_020 Hb_000424_150--Hb_003471_020 Hb_000230_180 Hb_000230_180 Hb_002498_050--Hb_000230_180 Hb_028707_080 Hb_028707_080 Hb_002498_050--Hb_028707_080 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_009851_050 Hb_009851_050 Hb_002498_050--Hb_009851_050 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16258 2.15031 2.34105 11.6782 8.99845 7.85314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123185 0.516793 1.8617 3.76592 4.67655

CAGE analysis