Hb_000258_320

Information

Type -
Description -
Location Contig258: 297817-298828
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26837: 297851-298573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_320 0.0 - - -
2 Hb_000169_190 0.1411799648 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
3 Hb_035318_010 0.1460573052 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
4 Hb_000504_170 0.1462509211 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
5 Hb_007083_010 0.1510724128 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
6 Hb_014720_170 0.1512439227 - - glutaredoxin-1, grx1, putative [Ricinus communis]
7 Hb_000996_180 0.1538784885 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
8 Hb_007778_020 0.1545907082 - - -
9 Hb_107847_010 0.1548644971 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
10 Hb_000175_090 0.157643199 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009693_030 0.1612072036 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_012184_050 0.1644369864 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
13 Hb_141532_010 0.1647615381 - - PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_000152_670 0.1652350413 - - hypothetical protein VITISV_037603 [Vitis vinifera]
15 Hb_121729_020 0.1653938701 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001910_020 0.1669946974 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
17 Hb_089889_020 0.1670339391 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
18 Hb_188996_010 0.1699802921 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007123_070 0.1711537421 - - -
20 Hb_063409_020 0.1737021614 - - Calcium-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000258_320 Hb_000258_320 Hb_000169_190 Hb_000169_190 Hb_000258_320--Hb_000169_190 Hb_035318_010 Hb_035318_010 Hb_000258_320--Hb_035318_010 Hb_000504_170 Hb_000504_170 Hb_000258_320--Hb_000504_170 Hb_007083_010 Hb_007083_010 Hb_000258_320--Hb_007083_010 Hb_014720_170 Hb_014720_170 Hb_000258_320--Hb_014720_170 Hb_000996_180 Hb_000996_180 Hb_000258_320--Hb_000996_180 Hb_012184_050 Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_001910_020 Hb_001910_020 Hb_035318_010--Hb_001910_020 Hb_000787_170 Hb_000787_170 Hb_035318_010--Hb_000787_170 Hb_001882_040 Hb_001882_040 Hb_035318_010--Hb_001882_040 Hb_152453_010 Hb_152453_010 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_000939_060 Hb_000939_060 Hb_035318_010--Hb_000939_060 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_000504_170--Hb_007083_010 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_007083_010--Hb_014720_170 Hb_007083_010--Hb_027472_210 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_002026_140 Hb_002026_140 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_001135_020 Hb_001135_020 Hb_014720_170--Hb_001135_020 Hb_001828_200 Hb_001828_200 Hb_014720_170--Hb_001828_200 Hb_002292_010 Hb_002292_010 Hb_014720_170--Hb_002292_010 Hb_014720_170--Hb_002026_140 Hb_014720_170--Hb_000504_170 Hb_107847_010 Hb_107847_010 Hb_000996_180--Hb_107847_010 Hb_089889_020 Hb_089889_020 Hb_000996_180--Hb_089889_020 Hb_009693_030 Hb_009693_030 Hb_000996_180--Hb_009693_030 Hb_000152_670 Hb_000152_670 Hb_000996_180--Hb_000152_670 Hb_009838_130 Hb_009838_130 Hb_000996_180--Hb_009838_130 Hb_002411_180 Hb_002411_180 Hb_000996_180--Hb_002411_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3044 12.8617 13.5066 6.83858 14.8694 17.7299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22801 6.60937 1.90599 0.921314 0.288609

CAGE analysis