Hb_000258_350

Information

Type -
Description -
Location Contig258: 330705-333505
Sequence    

Annotation

kegg
ID rcu:RCOM_1514770
description 40S ribosomal protein S9, putative
nr
ID XP_012080241.1
description PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
swissprot
ID Q9FLF0
description 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1
trembl
ID A0A067K8C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26845: 331376-333333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_350 0.0 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
2 Hb_114893_030 0.0835046557 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
3 Hb_000698_030 0.090434547 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
4 Hb_011609_100 0.0909434064 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
5 Hb_172632_090 0.0930280426 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
6 Hb_009265_090 0.0943887193 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
7 Hb_003126_080 0.0944019762 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
8 Hb_001159_140 0.0944295293 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
9 Hb_004800_070 0.0958038397 - - -
10 Hb_001540_010 0.0969940255 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
11 Hb_005322_040 0.0975244108 - - 60S ribosomal protein L9, putative [Ricinus communis]
12 Hb_001481_090 0.0989197529 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
13 Hb_000917_110 0.1002889191 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
14 Hb_002311_350 0.1006561231 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
15 Hb_001269_630 0.1020472555 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
16 Hb_001828_090 0.1062034921 - - prohibitin, putative [Ricinus communis]
17 Hb_002232_440 0.1073466224 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
18 Hb_001766_110 0.1079488084 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
19 Hb_000251_130 0.1085488888 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
20 Hb_003992_240 0.108849577 - - -

Gene co-expression network

sample Hb_000258_350 Hb_000258_350 Hb_114893_030 Hb_114893_030 Hb_000258_350--Hb_114893_030 Hb_000698_030 Hb_000698_030 Hb_000258_350--Hb_000698_030 Hb_011609_100 Hb_011609_100 Hb_000258_350--Hb_011609_100 Hb_172632_090 Hb_172632_090 Hb_000258_350--Hb_172632_090 Hb_009265_090 Hb_009265_090 Hb_000258_350--Hb_009265_090 Hb_003126_080 Hb_003126_080 Hb_000258_350--Hb_003126_080 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_114893_030--Hb_022425_040 Hb_000917_110 Hb_000917_110 Hb_114893_030--Hb_000917_110 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_015279_010 Hb_015279_010 Hb_114893_030--Hb_015279_010 Hb_001832_060 Hb_001832_060 Hb_000698_030--Hb_001832_060 Hb_001235_190 Hb_001235_190 Hb_000698_030--Hb_001235_190 Hb_000866_270 Hb_000866_270 Hb_000698_030--Hb_000866_270 Hb_028995_040 Hb_028995_040 Hb_000698_030--Hb_028995_040 Hb_000462_130 Hb_000462_130 Hb_000698_030--Hb_000462_130 Hb_001269_630 Hb_001269_630 Hb_000698_030--Hb_001269_630 Hb_003992_240 Hb_003992_240 Hb_011609_100--Hb_003992_240 Hb_005322_040 Hb_005322_040 Hb_011609_100--Hb_005322_040 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_000959_210 Hb_000959_210 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020 Hb_172632_090--Hb_003126_080 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_001226_160 Hb_001226_160 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_002375_090 Hb_002375_090 Hb_009265_090--Hb_002375_090 Hb_000264_090 Hb_000264_090 Hb_009265_090--Hb_000264_090 Hb_009265_090--Hb_114893_030 Hb_009265_090--Hb_015279_010 Hb_009265_090--Hb_000917_110 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_003126_080--Hb_005993_040 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.3822 47.5002 36.6897 20.5373 77.8096 56.2066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.0351 157.829 65.5317 67.4394 14.2539

CAGE analysis