Hb_000258_370

Information

Type -
Description -
Location Contig258: 343292-343870
Sequence    

Annotation

kegg
ID tcc:TCM_011746
description hypothetical protein
nr
ID CAH56540.1
description hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID Q5ZGH7
description Putative uncharacterized protein OS=Ricinus communis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26846: 342880-343940
cDNA
(Sanger)
(ID:Location)		 019_M23.ab1: 343147-343738

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_370 0.0 - - hypothetical protein [Ricinus communis]
2 Hb_138585_100 0.0551278054 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
3 Hb_002071_050 0.1121311785 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
4 Hb_006711_070 0.1278075735 - - hypothetical protein RCOM_1336320 [Ricinus communis]
5 Hb_000252_210 0.1337860891 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
6 Hb_003125_030 0.1380165636 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_006054_030 0.1410591638 - - PREDICTED: protein GPR107-like [Jatropha curcas]
8 Hb_000117_060 0.1441350022 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
9 Hb_001246_120 0.1462231859 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
10 Hb_000134_340 0.1489897662 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
11 Hb_104265_030 0.1550115726 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
12 Hb_000460_060 0.1564634796 - - importin beta-1, putative [Ricinus communis]
13 Hb_009028_010 0.1573008268 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
14 Hb_004970_180 0.1577331224 - - -
15 Hb_001437_010 0.1581831988 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
16 Hb_000270_230 0.160532769 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
17 Hb_003018_040 0.1629848485 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
18 Hb_001856_220 0.163847242 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010661_010 0.1649227293 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
20 Hb_030116_010 0.1649419157 - - F-box protein, atfbl3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000258_370 Hb_000258_370 Hb_138585_100 Hb_138585_100 Hb_000258_370--Hb_138585_100 Hb_002071_050 Hb_002071_050 Hb_000258_370--Hb_002071_050 Hb_006711_070 Hb_006711_070 Hb_000258_370--Hb_006711_070 Hb_000252_210 Hb_000252_210 Hb_000258_370--Hb_000252_210 Hb_003125_030 Hb_003125_030 Hb_000258_370--Hb_003125_030 Hb_006054_030 Hb_006054_030 Hb_000258_370--Hb_006054_030 Hb_138585_100--Hb_006054_030 Hb_138585_100--Hb_002071_050 Hb_138585_100--Hb_000252_210 Hb_138585_100--Hb_006711_070 Hb_000270_230 Hb_000270_230 Hb_138585_100--Hb_000270_230 Hb_002071_050--Hb_000252_210 Hb_001405_160 Hb_001405_160 Hb_002071_050--Hb_001405_160 Hb_009028_010 Hb_009028_010 Hb_002071_050--Hb_009028_010 Hb_001856_220 Hb_001856_220 Hb_002071_050--Hb_001856_220 Hb_005015_080 Hb_005015_080 Hb_002071_050--Hb_005015_080 Hb_007850_090 Hb_007850_090 Hb_002071_050--Hb_007850_090 Hb_000117_060 Hb_000117_060 Hb_006711_070--Hb_000117_060 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_000134_340 Hb_000134_340 Hb_006711_070--Hb_000134_340 Hb_005096_010 Hb_005096_010 Hb_006711_070--Hb_005096_010 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_010661_010 Hb_010661_010 Hb_000252_210--Hb_010661_010 Hb_127311_010 Hb_127311_010 Hb_000252_210--Hb_127311_010 Hb_000460_060 Hb_000460_060 Hb_000252_210--Hb_000460_060 Hb_000252_210--Hb_001856_220 Hb_000252_210--Hb_001405_160 Hb_104265_030 Hb_104265_030 Hb_003125_030--Hb_104265_030 Hb_012226_010 Hb_012226_010 Hb_003125_030--Hb_012226_010 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_000941_080 Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_000069_780 Hb_000069_780 Hb_006054_030--Hb_000069_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_006054_030--Hb_000270_230 Hb_006054_030--Hb_000460_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.969 317.801 41.6262 169.993 62.2674 78.4186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.4021 43.948 42.0824 28.5221 76.4972

CAGE analysis