Hb_000258_380

Information

Type -
Description -
Location Contig258: 353266-356165
Sequence    

Annotation

kegg
ID rcu:RCOM_0141700
description hypothetical protein
nr
ID XP_012067612.1
description PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
swissprot
ID Q8L736
description F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2
trembl
ID A0A067L1U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26848: 353027-355985 , PASA_asmbl_26849: 354727-355898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_380 0.0 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
2 Hb_003078_050 0.1288844223 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
3 Hb_000056_170 0.1468003536 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000634_070 0.1523344484 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
5 Hb_003097_100 0.1562942614 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
6 Hb_010921_030 0.1574232885 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
7 Hb_001525_010 0.1637820073 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
8 Hb_028207_040 0.1645514304 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
9 Hb_004200_020 0.1654497533 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_000987_060 0.1727381032 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
11 Hb_000069_230 0.1759076699 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
12 Hb_001766_020 0.1769887986 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
13 Hb_012564_030 0.1783161642 - - coronatine-insensitive 1 [Hevea brasiliensis]
14 Hb_000953_050 0.178603904 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
15 Hb_001629_060 0.1793547704 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
16 Hb_000976_280 0.18039375 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
17 Hb_006788_140 0.1808876722 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
18 Hb_022250_090 0.1817091381 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
19 Hb_000832_030 0.1820805085 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
20 Hb_005843_100 0.1825255845 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]

Gene co-expression network

sample Hb_000258_380 Hb_000258_380 Hb_003078_050 Hb_003078_050 Hb_000258_380--Hb_003078_050 Hb_000056_170 Hb_000056_170 Hb_000258_380--Hb_000056_170 Hb_000634_070 Hb_000634_070 Hb_000258_380--Hb_000634_070 Hb_003097_100 Hb_003097_100 Hb_000258_380--Hb_003097_100 Hb_010921_030 Hb_010921_030 Hb_000258_380--Hb_010921_030 Hb_001525_010 Hb_001525_010 Hb_000258_380--Hb_001525_010 Hb_003078_050--Hb_000634_070 Hb_000069_230 Hb_000069_230 Hb_003078_050--Hb_000069_230 Hb_028207_040 Hb_028207_040 Hb_003078_050--Hb_028207_040 Hb_003078_050--Hb_003097_100 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_006909_060 Hb_006909_060 Hb_000056_170--Hb_006909_060 Hb_003411_030 Hb_003411_030 Hb_000056_170--Hb_003411_030 Hb_002572_050 Hb_002572_050 Hb_000056_170--Hb_002572_050 Hb_000953_050 Hb_000953_050 Hb_000056_170--Hb_000953_050 Hb_000210_010 Hb_000210_010 Hb_000056_170--Hb_000210_010 Hb_000634_070--Hb_003097_100 Hb_000634_070--Hb_000069_230 Hb_000634_070--Hb_000953_050 Hb_000634_070--Hb_001205_030 Hb_000634_070--Hb_028207_040 Hb_003097_100--Hb_000069_230 Hb_003097_100--Hb_028207_040 Hb_022693_050 Hb_022693_050 Hb_003097_100--Hb_022693_050 Hb_003728_040 Hb_003728_040 Hb_003097_100--Hb_003728_040 Hb_010921_030--Hb_001205_030 Hb_010921_030--Hb_000953_050 Hb_000243_380 Hb_000243_380 Hb_010921_030--Hb_000243_380 Hb_029223_050 Hb_029223_050 Hb_010921_030--Hb_029223_050 Hb_000003_550 Hb_000003_550 Hb_010921_030--Hb_000003_550 Hb_003752_100 Hb_003752_100 Hb_010921_030--Hb_003752_100 Hb_001525_010--Hb_028207_040 Hb_003506_070 Hb_003506_070 Hb_001525_010--Hb_003506_070 Hb_003125_030 Hb_003125_030 Hb_001525_010--Hb_003125_030 Hb_001525_010--Hb_000953_050 Hb_000540_110 Hb_000540_110 Hb_001525_010--Hb_000540_110 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.631 115.076 12.7734 24.8067 16.0747 12.7933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4624 38.7359 59.0678 12.4991 20.9545

CAGE analysis