Hb_000258_410

Information

Type -
Description -
Location Contig258: 389002-393097
Sequence    

Annotation

kegg
ID rcu:RCOM_0697220
description nucleic acid binding protein, putative
nr
ID XP_012067604.1
description PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID A0A067L1T3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15575 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein vip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26852: 389060-393029 , PASA_asmbl_26853: 391140-392544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_410 0.0 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
2 Hb_008406_160 0.0624080305 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
3 Hb_000997_060 0.0719297734 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
4 Hb_000237_230 0.0815699052 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
5 Hb_005271_070 0.0820131209 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_011537_040 0.0821118681 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
7 Hb_000176_110 0.0824102471 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
8 Hb_004096_170 0.0824842264 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
9 Hb_007441_340 0.0832534591 - - protein with unknown function [Ricinus communis]
10 Hb_164010_020 0.0871891907 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
11 Hb_003453_020 0.0900543645 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
12 Hb_015941_030 0.0914584571 - - unknown [Populus trichocarpa]
13 Hb_000265_150 0.0916762287 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
14 Hb_000645_150 0.0968853515 - - zinc finger protein, putative [Ricinus communis]
15 Hb_061908_010 0.0976540518 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
16 Hb_002475_160 0.0987497548 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
17 Hb_025557_020 0.0992994374 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
18 Hb_012305_070 0.0996118902 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000116_110 0.1006105768 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
20 Hb_000012_090 0.1007030224 - - 3'-5' exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000258_410 Hb_000258_410 Hb_008406_160 Hb_008406_160 Hb_000258_410--Hb_008406_160 Hb_000997_060 Hb_000997_060 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_005271_070 Hb_005271_070 Hb_000258_410--Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_000258_410--Hb_011537_040 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_002232_170 Hb_002232_170 Hb_000997_060--Hb_002232_170 Hb_000997_060--Hb_015941_030 Hb_123475_010 Hb_123475_010 Hb_000997_060--Hb_123475_010 Hb_000272_100 Hb_000272_100 Hb_000997_060--Hb_000272_100 Hb_000732_020 Hb_000732_020 Hb_000237_230--Hb_000732_020 Hb_000814_090 Hb_000814_090 Hb_000237_230--Hb_000814_090 Hb_000237_230--Hb_000176_110 Hb_002955_010 Hb_002955_010 Hb_000237_230--Hb_002955_010 Hb_000645_150 Hb_000645_150 Hb_000237_230--Hb_000645_150 Hb_005271_070--Hb_011537_040 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_004374_010 Hb_004374_010 Hb_005271_070--Hb_004374_010 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_011537_040--Hb_004374_010 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
217.269 72.1327 33.9055 46.0709 248.01 251.376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
228.491 132.194 54.3059 61.5371 24.5198

CAGE analysis