Hb_000260_010

Information

Type -
Description -
Location Contig260: 3066-12593
Sequence    

Annotation

kegg
ID rcu:RCOM_1058020
description phospholipid-transporting atpase, putative (EC:3.6.3.1)
nr
ID XP_012091040.1
description PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
swissprot
ID P98204
description Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=2 SV=1
trembl
ID A0A067JQP3
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_00646 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26927: 3407-10990 , PASA_asmbl_26928: 10991-11925 , PASA_asmbl_26929: 11494-12330 , PASA_asmbl_26930: 11993-12454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_010 0.0 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
2 Hb_001163_100 0.0515883336 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_027380_220 0.0650481358 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
4 Hb_002809_050 0.0661401979 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
5 Hb_001912_110 0.0674283787 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001377_490 0.0680216027 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
7 Hb_164010_030 0.0718977805 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
8 Hb_001936_130 0.0738670581 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
9 Hb_001004_070 0.0782097991 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029510_050 0.079073128 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
11 Hb_000213_010 0.0795157073 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
12 Hb_000340_230 0.0801345609 - - synapse-associated protein, putative [Ricinus communis]
13 Hb_007416_090 0.0805975884 - - UDP-sugar transporter, putative [Ricinus communis]
14 Hb_002740_180 0.0806546297 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005291_050 0.0808907737 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
16 Hb_000009_560 0.0832171002 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
17 Hb_003994_280 0.0879260332 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
18 Hb_029879_070 0.0882943132 - - PREDICTED: phospholipase A I [Jatropha curcas]
19 Hb_000254_090 0.0891253983 - - PREDICTED: la protein 2 [Jatropha curcas]
20 Hb_022115_020 0.0905951663 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_010 Hb_000260_010 Hb_001163_100 Hb_001163_100 Hb_000260_010--Hb_001163_100 Hb_027380_220 Hb_027380_220 Hb_000260_010--Hb_027380_220 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_001912_110 Hb_001912_110 Hb_000260_010--Hb_001912_110 Hb_001377_490 Hb_001377_490 Hb_000260_010--Hb_001377_490 Hb_164010_030 Hb_164010_030 Hb_000260_010--Hb_164010_030 Hb_000340_230 Hb_000340_230 Hb_001163_100--Hb_000340_230 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001163_100--Hb_001377_490 Hb_001936_130 Hb_001936_130 Hb_027380_220--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001004_070 Hb_001004_070 Hb_027380_220--Hb_001004_070 Hb_027380_220--Hb_001912_110 Hb_022115_020 Hb_022115_020 Hb_002809_050--Hb_022115_020 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_003177_030 Hb_003177_030 Hb_002809_050--Hb_003177_030 Hb_006938_080 Hb_006938_080 Hb_002809_050--Hb_006938_080 Hb_000096_140 Hb_000096_140 Hb_001912_110--Hb_000096_140 Hb_000260_350 Hb_000260_350 Hb_001912_110--Hb_000260_350 Hb_000349_260 Hb_000349_260 Hb_001912_110--Hb_000349_260 Hb_000925_130 Hb_000925_130 Hb_001912_110--Hb_000925_130 Hb_000185_040 Hb_000185_040 Hb_001377_490--Hb_000185_040 Hb_001377_490--Hb_000009_560 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_001377_490--Hb_164010_030 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250 Hb_000497_300 Hb_000497_300 Hb_164010_030--Hb_000497_300 Hb_000116_260 Hb_000116_260 Hb_164010_030--Hb_000116_260 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6021 4.63938 3.31357 8.91683 6.57735 6.33766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20784 5.44579 10.4117 6.23058 7.37059

CAGE analysis