Hb_000260_030

Information

Type transcription factor
Description TF Family: IWS1
Location Contig260: 28637-31763
Sequence    

Annotation

kegg
ID rcu:RCOM_1058130
description transcription elongation factor s-II, putative
nr
ID XP_002528699.1
description transcription elongation factor s-II, putative [Ricinus communis]
swissprot
ID Q9ZVH8
description Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1
trembl
ID B9SRT6
description Transcription elongation factor s-II, putative OS=Ricinus communis GN=RCOM_1058130 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor a protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26931: 28748-31699 , PASA_asmbl_26932: 28748-31699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_030 0.0 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
2 Hb_050514_010 0.0524825347 - - hypothetical protein 29 [Hevea brasiliensis]
3 Hb_004109_170 0.0551118513 - - PREDICTED: probable ribokinase [Jatropha curcas]
4 Hb_029879_130 0.0570932886 - - Derlin-2, putative [Ricinus communis]
5 Hb_000827_050 0.0634075482 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_001300_150 0.065545351 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
7 Hb_000614_160 0.0658586526 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
8 Hb_000985_030 0.067274498 - - PREDICTED: RRP15-like protein [Populus euphratica]
9 Hb_000465_160 0.0682243514 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
10 Hb_004934_100 0.0701416545 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002600_090 0.0702425206 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000599_250 0.0709088537 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
13 Hb_000703_350 0.0713798371 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
14 Hb_002408_020 0.0716077703 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
15 Hb_000205_090 0.073694174 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
16 Hb_118419_010 0.0743465103 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_001489_080 0.0754210923 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_001902_140 0.0755731821 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
19 Hb_000288_030 0.0773533195 - - PREDICTED: syntaxin-32 [Jatropha curcas]
20 Hb_003728_060 0.0778405929 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000260_030 Hb_000260_030 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_050514_010--Hb_000827_050 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_029879_130--Hb_004109_170 Hb_004635_100 Hb_004635_100 Hb_029879_130--Hb_004635_100 Hb_001902_140 Hb_001902_140 Hb_029879_130--Hb_001902_140 Hb_029879_130--Hb_000614_160 Hb_002408_020 Hb_002408_020 Hb_029879_130--Hb_002408_020 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_000827_050--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000827_050--Hb_000205_090 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5668 11.2428 19.3139 16.672 16.4371 13.9581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8224 26.334 30.967 13.2724 18.683

CAGE analysis