Hb_000260_050

Information

Type -
Description -
Location Contig260: 36847-40466
Sequence    

Annotation

kegg
ID rcu:RCOM_1058560
description ribosomal protein S6 kinase, putative (EC:2.7.11.13)
nr
ID XP_012091034.1
description PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
swissprot
ID Q39030
description Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2
trembl
ID A0A067JPB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00642 PE=4 SV=1
Gene Ontology
ID GO:0005840
description serine threonine-protein kinase 2 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26934: 36856-39962
cDNA
(Sanger)
(ID:Location)		 032_P13.ab1: 38584-39818 , 052_O08.ab1: 38584-39717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_050 0.0 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
2 Hb_007747_090 0.0678851285 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
3 Hb_000483_160 0.0692479199 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
4 Hb_004899_220 0.0721319787 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
5 Hb_002477_240 0.0740721127 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
6 Hb_000977_080 0.0757979041 - - type II inositol 5-phosphatase, putative [Ricinus communis]
7 Hb_001754_150 0.0758608155 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
8 Hb_001019_090 0.0785363687 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
9 Hb_001369_650 0.078682909 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
10 Hb_000045_130 0.0788415545 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
11 Hb_000531_020 0.0799887437 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
12 Hb_000025_530 0.083453859 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
13 Hb_001804_040 0.0845324908 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000866_300 0.0846343452 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
15 Hb_004297_100 0.0848539944 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
16 Hb_009767_120 0.0873980154 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
17 Hb_003001_060 0.0886348668 - - wound-responsive family protein [Populus trichocarpa]
18 Hb_001828_090 0.0899877041 - - prohibitin, putative [Ricinus communis]
19 Hb_000392_270 0.0905794053 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
20 Hb_001951_110 0.0927051088 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_050 Hb_000260_050 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000483_160 Hb_000483_160 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_002477_240 Hb_002477_240 Hb_000260_050--Hb_002477_240 Hb_000977_080 Hb_000977_080 Hb_000260_050--Hb_000977_080 Hb_001754_150 Hb_001754_150 Hb_000260_050--Hb_001754_150 Hb_143813_010 Hb_143813_010 Hb_007747_090--Hb_143813_010 Hb_000318_380 Hb_000318_380 Hb_007747_090--Hb_000318_380 Hb_000045_130 Hb_000045_130 Hb_007747_090--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_007747_090--Hb_001369_650 Hb_007747_090--Hb_000977_080 Hb_004297_100 Hb_004297_100 Hb_000483_160--Hb_004297_100 Hb_001019_090 Hb_001019_090 Hb_000483_160--Hb_001019_090 Hb_000417_110 Hb_000417_110 Hb_000483_160--Hb_000417_110 Hb_000483_160--Hb_002477_240 Hb_000483_160--Hb_004899_220 Hb_052135_030 Hb_052135_030 Hb_004899_220--Hb_052135_030 Hb_000025_530 Hb_000025_530 Hb_004899_220--Hb_000025_530 Hb_004899_220--Hb_007747_090 Hb_011805_080 Hb_011805_080 Hb_004899_220--Hb_011805_080 Hb_002477_240--Hb_001754_150 Hb_042202_010 Hb_042202_010 Hb_002477_240--Hb_042202_010 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_000703_140 Hb_000703_140 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_000392_270 Hb_000392_270 Hb_000977_080--Hb_000392_270 Hb_003551_020 Hb_003551_020 Hb_000977_080--Hb_003551_020 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_001754_150--Hb_001019_090 Hb_001804_040 Hb_001804_040 Hb_001754_150--Hb_001804_040 Hb_001754_150--Hb_042202_010 Hb_001754_150--Hb_000392_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8641 8.34808 7.98684 7.37632 35.501 39.4572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0738 60.412 26.1354 10.014 3.25729

CAGE analysis