Hb_000260_060

Information

Type -
Description -
Location Contig260: 40988-44207
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14550g
description POPTRDRAFT_577200; hypothetical protein
nr
ID XP_012091033.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
swissprot
ID Q9LZV3
description Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis thaliana GN=MAN6 PE=2 SV=1
trembl
ID A0A067JGE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00640 PE=3 SV=1
Gene Ontology
ID GO:0016985
description mannan endo- -beta-mannosidase 6-like isoform x5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26935: 40900-44143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_060 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
2 Hb_003497_030 0.1069374817 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_001677_110 0.1135094669 - - Protein YIPF1, putative [Ricinus communis]
4 Hb_024952_010 0.1148444869 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
5 Hb_010174_120 0.1154198513 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
6 Hb_002498_100 0.1159975718 - - bcr-associated protein, bap, putative [Ricinus communis]
7 Hb_000380_180 0.1182536327 - - kinase, putative [Ricinus communis]
8 Hb_000427_110 0.1201133899 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
9 Hb_000427_030 0.1256954879 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005463_020 0.1262541896 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
11 Hb_010589_040 0.1290853583 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004800_160 0.1291074821 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
13 Hb_000025_480 0.1314940837 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
14 Hb_010402_010 0.1318414947 - - BnaC06g23470D [Brassica napus]
15 Hb_026988_020 0.137410688 - - outward rectifying K+ channel [Hevea brasiliensis]
16 Hb_000173_170 0.1375428369 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_000249_130 0.1392757379 - - hypothetical protein RCOM_0254640 [Ricinus communis]
18 Hb_001606_070 0.1400152703 - - fimbrin, putative [Ricinus communis]
19 Hb_002352_010 0.1417641088 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
20 Hb_002357_040 0.1423608737 - - latex-abundant protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000260_060 Hb_000260_060 Hb_003497_030 Hb_003497_030 Hb_000260_060--Hb_003497_030 Hb_001677_110 Hb_001677_110 Hb_000260_060--Hb_001677_110 Hb_024952_010 Hb_024952_010 Hb_000260_060--Hb_024952_010 Hb_010174_120 Hb_010174_120 Hb_000260_060--Hb_010174_120 Hb_002498_100 Hb_002498_100 Hb_000260_060--Hb_002498_100 Hb_000380_180 Hb_000380_180 Hb_000260_060--Hb_000380_180 Hb_003497_030--Hb_000380_180 Hb_001606_070 Hb_001606_070 Hb_003497_030--Hb_001606_070 Hb_002357_040 Hb_002357_040 Hb_003497_030--Hb_002357_040 Hb_027751_020 Hb_027751_020 Hb_003497_030--Hb_027751_020 Hb_002835_170 Hb_002835_170 Hb_003497_030--Hb_002835_170 Hb_026988_020 Hb_026988_020 Hb_001677_110--Hb_026988_020 Hb_002352_010 Hb_002352_010 Hb_001677_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_001677_110--Hb_001473_130 Hb_000001_050 Hb_000001_050 Hb_001677_110--Hb_000001_050 Hb_008311_010 Hb_008311_010 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070 Hb_001396_230 Hb_001396_230 Hb_024952_010--Hb_001396_230 Hb_024952_010--Hb_001606_070 Hb_005779_100 Hb_005779_100 Hb_024952_010--Hb_005779_100 Hb_001153_220 Hb_001153_220 Hb_024952_010--Hb_001153_220 Hb_024952_010--Hb_002352_010 Hb_000861_040 Hb_000861_040 Hb_024952_010--Hb_000861_040 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_010402_010 Hb_010402_010 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130 Hb_000029_030 Hb_000029_030 Hb_002498_100--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_002498_100--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_002498_100--Hb_006693_030 Hb_000173_170 Hb_000173_170 Hb_002498_100--Hb_000173_170 Hb_002498_100--Hb_010402_010 Hb_007760_030 Hb_007760_030 Hb_002498_100--Hb_007760_030 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_000380_180--Hb_000249_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.8695 2.85249 4.93208 30.6239 66.524 93.8383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.0536 77.8571 170.118 9.14281 8.88319

CAGE analysis