Hb_000260_080

Information

Type -
Description -
Location Contig260: 54265-61013
Sequence    

Annotation

kegg
ID rcu:RCOM_1058730
description Thioredoxin H-type, putative
nr
ID AEC03318.1
description thioredoxin H-type 1 [Hevea brasiliensis]
swissprot
ID P85801
description Thioredoxin H-type OS=Populus jackii PE=1 SV=1
trembl
ID I1SSI9
description Thioredoxin H-type 1 OS=Hevea brasiliensis GN=TrxH1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description thioredoxin h-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26938: 54269-61055 , PASA_asmbl_26939: 54353-60791 , PASA_asmbl_26940: 54601-54794 , PASA_asmbl_26942: 59722-60092
cDNA
(Sanger)
(ID:Location)		 018_A20.ab1: 54422-61055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_080 0.0 - - thioredoxin H-type 1 [Hevea brasiliensis]
2 Hb_000703_140 0.0457193508 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
3 Hb_000329_040 0.0575966795 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
4 Hb_011794_070 0.0596103212 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
5 Hb_000883_050 0.0691205439 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
6 Hb_000025_530 0.0713531519 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
7 Hb_000531_020 0.0726250102 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
8 Hb_000376_050 0.0774784801 - - polyadenylate-binding protein, putative [Ricinus communis]
9 Hb_023386_080 0.080642254 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
10 Hb_000956_010 0.0809775404 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
11 Hb_004738_080 0.081903291 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
12 Hb_002477_240 0.0832403979 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
13 Hb_004108_230 0.0853180541 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
14 Hb_001427_120 0.0859782304 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
15 Hb_004899_320 0.0860939662 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
16 Hb_001754_150 0.0861073384 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
17 Hb_027472_180 0.0873264039 - - hypothetical protein L484_016229 [Morus notabilis]
18 Hb_009711_030 0.0891835301 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
19 Hb_002603_100 0.0892882281 - - ATATH9, putative [Ricinus communis]
20 Hb_011465_040 0.0898545792 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_080 Hb_000260_080 Hb_000703_140 Hb_000703_140 Hb_000260_080--Hb_000703_140 Hb_000329_040 Hb_000329_040 Hb_000260_080--Hb_000329_040 Hb_011794_070 Hb_011794_070 Hb_000260_080--Hb_011794_070 Hb_000883_050 Hb_000883_050 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000703_140--Hb_000883_050 Hb_000329_040--Hb_011794_070 Hb_023386_080 Hb_023386_080 Hb_000329_040--Hb_023386_080 Hb_000329_040--Hb_000376_050 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_011794_070--Hb_000883_050 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000025_530--Hb_000531_020 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_000531_020--Hb_000883_050 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.271 22.6339 33.2662 31.392 103.617 116.586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
137.995 210.088 132.68 27.6939 27.5667

CAGE analysis