Hb_000260_100

Information

Type -
Description -
Location Contig260: 68025-74134
Sequence    

Annotation

kegg
ID rcu:RCOM_1059350
description hypothetical protein
nr
ID XP_002528708.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRR6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1059350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26946: 68062-68486 , PASA_asmbl_26947: 68572-71492 , PASA_asmbl_26949: 71977-74065 , PASA_asmbl_26950: 71977-72312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005288_150 0.0448829374 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
3 Hb_002997_080 0.0523744826 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
4 Hb_000236_240 0.0575933802 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
5 Hb_001329_130 0.0619274548 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000230_560 0.0627145919 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
7 Hb_007007_060 0.0655537201 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
8 Hb_006960_050 0.0675466119 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
9 Hb_000866_010 0.0677362618 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004109_280 0.068358058 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
11 Hb_000883_020 0.0715698262 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_002918_030 0.0725022371 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
13 Hb_000331_110 0.0744700759 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
14 Hb_000141_250 0.0746071009 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
15 Hb_000649_070 0.074881574 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
16 Hb_009421_020 0.0754981264 - - PREDICTED: caltractin-like [Jatropha curcas]
17 Hb_009545_080 0.0758098965 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
18 Hb_033720_010 0.0758743195 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
19 Hb_020367_050 0.0771045266 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
20 Hb_006620_020 0.0778806455 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_100 Hb_000260_100 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_020367_050 Hb_020367_050 Hb_005288_150--Hb_020367_050 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_005288_150--Hb_001329_130 Hb_002997_080--Hb_000230_560 Hb_000883_020 Hb_000883_020 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000236_240--Hb_001329_130 Hb_000236_240--Hb_002997_080 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_006960_050 Hb_006960_050 Hb_001329_130--Hb_006960_050 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000230_560--Hb_000883_020 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9646 9.4845 19.3507 10.7414 19.0098 17.5069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.93 15.4126 11.4248 8.02969 11.4932

CAGE analysis