Hb_000260_120

Information

Type -
Description -
Location Contig260: 81263-85725
Sequence    

Annotation

kegg
ID rcu:RCOM_1059670
description DNA binding protein, putative
nr
ID XP_002528710.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRR8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1059670 PE=4 SV=1
Gene Ontology
ID GO:0006979
description flocculation protein flo11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26954: 81244-85692 , PASA_asmbl_26955: 83069-85675
cDNA
(Sanger)
(ID:Location)		 029_E16.ab1: 83607-85675

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_120 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_004545_060 0.0984950307 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
3 Hb_000001_050 0.0995442736 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
4 Hb_004705_100 0.1008345315 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
5 Hb_010931_090 0.1034616199 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001008_060 0.1039673581 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
7 Hb_000085_320 0.1050531325 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
8 Hb_141131_010 0.107127636 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
9 Hb_002078_150 0.1077960735 - - protein with unknown function [Ricinus communis]
10 Hb_010172_080 0.109323938 - - acetylglucosaminyltransferase, putative [Ricinus communis]
11 Hb_003038_030 0.1094666396 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
12 Hb_004976_030 0.1106280732 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
13 Hb_029866_040 0.1126558054 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
14 Hb_003055_120 0.1133884816 - - Protein C20orf11, putative [Ricinus communis]
15 Hb_063134_010 0.1135728419 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
16 Hb_005686_060 0.1146266963 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
17 Hb_002659_070 0.1147847011 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
18 Hb_011381_100 0.1158186412 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
19 Hb_000684_230 0.1164703191 - - 40S ribosomal protein S23, putative [Ricinus communis]
20 Hb_007193_100 0.1165878283 - - syntaxin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000260_120 Hb_000260_120 Hb_004545_060 Hb_004545_060 Hb_000260_120--Hb_004545_060 Hb_000001_050 Hb_000001_050 Hb_000260_120--Hb_000001_050 Hb_004705_100 Hb_004705_100 Hb_000260_120--Hb_004705_100 Hb_010931_090 Hb_010931_090 Hb_000260_120--Hb_010931_090 Hb_001008_060 Hb_001008_060 Hb_000260_120--Hb_001008_060 Hb_000085_320 Hb_000085_320 Hb_000260_120--Hb_000085_320 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_029866_040 Hb_029866_040 Hb_000001_050--Hb_029866_040 Hb_000046_110 Hb_000046_110 Hb_000001_050--Hb_000046_110 Hb_071736_020 Hb_071736_020 Hb_000001_050--Hb_071736_020 Hb_008311_010 Hb_008311_010 Hb_000001_050--Hb_008311_010 Hb_001677_110 Hb_001677_110 Hb_000001_050--Hb_001677_110 Hb_005686_060 Hb_005686_060 Hb_004705_100--Hb_005686_060 Hb_092337_010 Hb_092337_010 Hb_004705_100--Hb_092337_010 Hb_010172_080 Hb_010172_080 Hb_004705_100--Hb_010172_080 Hb_000700_110 Hb_000700_110 Hb_004705_100--Hb_000700_110 Hb_000692_220 Hb_000692_220 Hb_004705_100--Hb_000692_220 Hb_009773_020 Hb_009773_020 Hb_004705_100--Hb_009773_020 Hb_010655_010 Hb_010655_010 Hb_010931_090--Hb_010655_010 Hb_010931_090--Hb_001008_060 Hb_010931_090--Hb_004545_060 Hb_010931_090--Hb_003038_030 Hb_010931_090--Hb_010172_080 Hb_009711_030 Hb_009711_030 Hb_001008_060--Hb_009711_030 Hb_002078_450 Hb_002078_450 Hb_001008_060--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_001008_060--Hb_022250_040 Hb_001008_060--Hb_000085_320 Hb_011794_070 Hb_011794_070 Hb_001008_060--Hb_011794_070 Hb_000703_140 Hb_000703_140 Hb_001008_060--Hb_000703_140 Hb_002874_190 Hb_002874_190 Hb_000085_320--Hb_002874_190 Hb_000007_100 Hb_000007_100 Hb_000085_320--Hb_000007_100 Hb_004032_100 Hb_004032_100 Hb_000085_320--Hb_004032_100 Hb_001383_060 Hb_001383_060 Hb_000085_320--Hb_001383_060 Hb_000380_190 Hb_000380_190 Hb_000085_320--Hb_000380_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5729 11.4144 5.26639 29.3022 37.2293 50.1214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.6303 53.9788 48.4219 9.38194 7.73031

CAGE analysis