Hb_000260_130

Information

Type -
Description -
Location Contig260: 96795-98509
Sequence    

Annotation

kegg
ID rcu:RCOM_0126240
description Acid phosphatase 1 precursor, putative (EC:3.1.3.2)
nr
ID XP_002531803.1
description Acid phosphatase 1 precursor, putative [Ricinus communis]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9T0N4
description Acid phosphatase 1, putative OS=Ricinus communis GN=RCOM_0126240 PE=4 SV=1
Gene Ontology
ID GO:0003993
description acid phosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26956: 96799-97443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_130 0.0 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
2 Hb_005714_140 0.0861028001 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_161045_010 0.0920353404 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
4 Hb_002267_030 0.098222012 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
5 Hb_004242_160 0.1051756974 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
6 Hb_007305_040 0.113348503 - - Nodulin-26, putative [Ricinus communis]
7 Hb_001511_270 0.1137965266 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
8 Hb_001814_100 0.118094501 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
9 Hb_010417_120 0.1190848564 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002236_020 0.1191567666 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
11 Hb_000252_190 0.1297829918 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
12 Hb_008550_030 0.1317009083 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
13 Hb_073973_180 0.1336950904 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
14 Hb_002820_090 0.1399803264 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
15 Hb_001098_020 0.1441355392 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
16 Hb_094839_010 0.1455425772 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000417_230 0.1480123884 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000087_180 0.1480517297 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000060_100 0.1483605009 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
20 Hb_011805_060 0.155921721 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_130 Hb_000260_130 Hb_005714_140 Hb_005714_140 Hb_000260_130--Hb_005714_140 Hb_161045_010 Hb_161045_010 Hb_000260_130--Hb_161045_010 Hb_002267_030 Hb_002267_030 Hb_000260_130--Hb_002267_030 Hb_004242_160 Hb_004242_160 Hb_000260_130--Hb_004242_160 Hb_007305_040 Hb_007305_040 Hb_000260_130--Hb_007305_040 Hb_001511_270 Hb_001511_270 Hb_000260_130--Hb_001511_270 Hb_005714_140--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_005714_140--Hb_000252_190 Hb_002820_090 Hb_002820_090 Hb_005714_140--Hb_002820_090 Hb_005714_140--Hb_004242_160 Hb_000060_100 Hb_000060_100 Hb_005714_140--Hb_000060_100 Hb_001814_100 Hb_001814_100 Hb_161045_010--Hb_001814_100 Hb_073973_180 Hb_073973_180 Hb_161045_010--Hb_073973_180 Hb_161045_010--Hb_004242_160 Hb_002422_030 Hb_002422_030 Hb_161045_010--Hb_002422_030 Hb_001098_020 Hb_001098_020 Hb_161045_010--Hb_001098_020 Hb_123078_010 Hb_123078_010 Hb_002267_030--Hb_123078_010 Hb_008550_030 Hb_008550_030 Hb_002267_030--Hb_008550_030 Hb_105814_020 Hb_105814_020 Hb_002267_030--Hb_105814_020 Hb_002267_030--Hb_002820_090 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_001477_080 Hb_001477_080 Hb_004242_160--Hb_001477_080 Hb_004242_160--Hb_001511_270 Hb_004242_160--Hb_001098_020 Hb_000529_050 Hb_000529_050 Hb_004242_160--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_004242_160--Hb_000313_190 Hb_000625_040 Hb_000625_040 Hb_007305_040--Hb_000625_040 Hb_002236_020 Hb_002236_020 Hb_007305_040--Hb_002236_020 Hb_000347_370 Hb_000347_370 Hb_007305_040--Hb_000347_370 Hb_024857_010 Hb_024857_010 Hb_007305_040--Hb_024857_010 Hb_004531_010 Hb_004531_010 Hb_007305_040--Hb_004531_010 Hb_116349_090 Hb_116349_090 Hb_001511_270--Hb_116349_090 Hb_002849_030 Hb_002849_030 Hb_001511_270--Hb_002849_030 Hb_001511_270--Hb_001477_080 Hb_009189_010 Hb_009189_010 Hb_001511_270--Hb_009189_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.68871 0.339013 1.46579 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.107759 0.42739

CAGE analysis