Hb_000260_140

Information

Type -
Description -
Location Contig260: 98784-101630
Sequence    

Annotation

kegg
ID rcu:RCOM_0126250
description Root phototropism protein, putative
nr
ID XP_012091015.1
description PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
swissprot
ID Q9C9Z7
description BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2
trembl
ID A0A067JPB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00632 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26957: 98856-100668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_140 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
2 Hb_002783_020 0.1122353076 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
3 Hb_149838_010 0.1166292392 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
4 Hb_005527_080 0.1558268401 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
5 Hb_002708_020 0.1774449912 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
6 Hb_004176_060 0.1836563372 - - -
7 Hb_000160_150 0.1909367427 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
8 Hb_027402_090 0.1919129882 - - endonuclease, putative [Ricinus communis]
9 Hb_002686_330 0.1965618802 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
10 Hb_054436_010 0.2194830285 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
11 Hb_006816_330 0.2198252213 - - exonuclease, putative [Ricinus communis]
12 Hb_002475_120 0.2265623056 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
13 Hb_007456_010 0.2369483109 - - hypothetical protein L484_003540 [Morus notabilis]
14 Hb_006960_030 0.2398215213 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
15 Hb_101020_010 0.2409691233 - - -
16 Hb_000265_220 0.2423969262 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
17 Hb_000318_240 0.2444102742 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000140_490 0.2461565136 - - BnaC01g32630D [Brassica napus]
19 Hb_006230_040 0.2469348576 - - kinase, putative [Ricinus communis]
20 Hb_000243_090 0.2501380376 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_140 Hb_000260_140 Hb_002783_020 Hb_002783_020 Hb_000260_140--Hb_002783_020 Hb_149838_010 Hb_149838_010 Hb_000260_140--Hb_149838_010 Hb_005527_080 Hb_005527_080 Hb_000260_140--Hb_005527_080 Hb_002708_020 Hb_002708_020 Hb_000260_140--Hb_002708_020 Hb_004176_060 Hb_004176_060 Hb_000260_140--Hb_004176_060 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_002783_020--Hb_149838_010 Hb_027402_090 Hb_027402_090 Hb_002783_020--Hb_027402_090 Hb_002783_020--Hb_002708_020 Hb_002686_330 Hb_002686_330 Hb_002783_020--Hb_002686_330 Hb_002783_020--Hb_004176_060 Hb_149838_010--Hb_027402_090 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_149838_010--Hb_002686_330 Hb_005527_080--Hb_149838_010 Hb_005527_080--Hb_002783_020 Hb_005527_080--Hb_002708_020 Hb_054436_010 Hb_054436_010 Hb_005527_080--Hb_054436_010 Hb_005527_080--Hb_027402_090 Hb_002708_020--Hb_000160_150 Hb_002708_020--Hb_002686_330 Hb_008246_030 Hb_008246_030 Hb_002708_020--Hb_008246_030 Hb_002708_020--Hb_027402_090 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_004176_060--Hb_149838_010 Hb_004176_060--Hb_027402_090 Hb_008725_140 Hb_008725_140 Hb_004176_060--Hb_008725_140 Hb_002596_030 Hb_002596_030 Hb_004176_060--Hb_002596_030 Hb_171619_010 Hb_171619_010 Hb_000160_150--Hb_171619_010 Hb_000160_150--Hb_027402_090 Hb_000160_150--Hb_008246_030 Hb_170532_010 Hb_170532_010 Hb_000160_150--Hb_170532_010 Hb_000160_150--Hb_002686_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.89404 1.37499 11.4174 2.09134 11.2748 8.64452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.763251 0.262735 0 0.612532 1.82166

CAGE analysis