Hb_000260_170

Information

Type -
Description -
Location Contig260: 133778-139241
Sequence    

Annotation

kegg
ID csv:101209937
description putative zinc transporter At3g08650-like
nr
ID XP_004142672.1
description PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
swissprot
ID Q9C9Z1
description Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650 PE=2 SV=2
trembl
ID A0A0A0KYA3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337250 PE=4 SV=1
Gene Ontology
ID GO:0016020
description zinc transporter at3g08650

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26967: 134214-139301 , PASA_asmbl_26968: 134951-139273 , PASA_asmbl_26969: 134143-134949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_170 0.0 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
2 Hb_001946_010 0.046502701 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_103012_010 0.0508867647 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_004117_130 0.0617968818 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
5 Hb_020719_030 0.0619093098 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
6 Hb_040262_010 0.07099183 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
7 Hb_002671_100 0.0734716752 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
8 Hb_033834_060 0.0736560295 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
9 Hb_000205_100 0.0743199344 - - PREDICTED: exportin-4 [Jatropha curcas]
10 Hb_011930_160 0.0768461549 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
11 Hb_004689_050 0.076852467 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003813_130 0.0778012279 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
13 Hb_000212_240 0.0779868723 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_000193_190 0.078017002 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
15 Hb_002716_130 0.0789335512 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
16 Hb_001488_410 0.0806851247 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
17 Hb_002783_240 0.0808904124 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
18 Hb_001579_320 0.0826472061 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
19 Hb_003375_070 0.0832150811 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
20 Hb_003025_110 0.0837316779 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_170 Hb_000260_170 Hb_001946_010 Hb_001946_010 Hb_000260_170--Hb_001946_010 Hb_103012_010 Hb_103012_010 Hb_000260_170--Hb_103012_010 Hb_004117_130 Hb_004117_130 Hb_000260_170--Hb_004117_130 Hb_020719_030 Hb_020719_030 Hb_000260_170--Hb_020719_030 Hb_040262_010 Hb_040262_010 Hb_000260_170--Hb_040262_010 Hb_002671_100 Hb_002671_100 Hb_000260_170--Hb_002671_100 Hb_001946_010--Hb_103012_010 Hb_011930_160 Hb_011930_160 Hb_001946_010--Hb_011930_160 Hb_000193_190 Hb_000193_190 Hb_001946_010--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_004117_130--Hb_020719_030 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_002272_180 Hb_002272_180 Hb_020719_030--Hb_002272_180 Hb_033834_060 Hb_033834_060 Hb_020719_030--Hb_033834_060 Hb_001488_410 Hb_001488_410 Hb_020719_030--Hb_001488_410 Hb_020719_030--Hb_103012_010 Hb_040262_010--Hb_002671_100 Hb_040262_010--Hb_103012_010 Hb_040262_010--Hb_001946_010 Hb_040262_010--Hb_007317_110 Hb_007594_130 Hb_007594_130 Hb_040262_010--Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_002671_100--Hb_004117_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4322 5.57565 6.96715 12.0164 15.6332 19.4242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.463 9.31277 8.25531 13.2878 7.84763

CAGE analysis