Hb_000260_180

Information

Type -
Description -
Location Contig260: 139444-147242
Sequence    

Annotation

kegg
ID tcc:TCM_019653
description RNA-binding KH domain-containing protein
nr
ID XP_012091006.1
description PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
swissprot
ID Q9ZVI3
description KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1
trembl
ID A0A067JPA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00627 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at2g38610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26971: 139481-141141 , PASA_asmbl_26972: 139481-141110 , PASA_asmbl_26973: 141608-146946 , PASA_asmbl_26974: 141608-146888
cDNA
(Sanger)
(ID:Location)		 002_P07.ab1: 140233-141141 , 006_P03.ab1: 140265-141141 , 009_O22.ab1: 140368-141141 , 033_E17.ab1: 140264-141141 , 035_I15.ab1: 140292-141141 , 037_L20.ab1: 140187-141141 , 045_E16.ab1: 140185-141141 , 053_K01.ab1: 140273-141141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_180 0.0 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
2 Hb_001410_020 0.0518931222 - - cdk8, putative [Ricinus communis]
3 Hb_006588_210 0.0589496715 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
4 Hb_012779_090 0.077408925 - - PREDICTED: lipase member N [Jatropha curcas]
5 Hb_162275_050 0.080287803 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
6 Hb_005541_010 0.0817391105 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
7 Hb_000025_730 0.0845018504 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
8 Hb_010381_030 0.0863614018 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
9 Hb_000868_110 0.0874758461 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
10 Hb_000402_080 0.0887651777 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
11 Hb_095296_010 0.0898026557 - - PREDICTED: syntaxin-32 [Jatropha curcas]
12 Hb_004553_030 0.0898216819 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
13 Hb_000905_210 0.0910257758 - - PREDICTED: protein gar2 [Jatropha curcas]
14 Hb_002073_200 0.0911005779 - - Phosphatase 2A-2 [Theobroma cacao]
15 Hb_003666_020 0.0918862574 - - kinase, putative [Ricinus communis]
16 Hb_021576_110 0.0932475542 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
17 Hb_000442_010 0.0937305961 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
18 Hb_000087_060 0.0944329462 - - protein transporter, putative [Ricinus communis]
19 Hb_002411_030 0.0949842149 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
20 Hb_000373_230 0.0950616891 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_180 Hb_000260_180 Hb_001410_020 Hb_001410_020 Hb_000260_180--Hb_001410_020 Hb_006588_210 Hb_006588_210 Hb_000260_180--Hb_006588_210 Hb_012779_090 Hb_012779_090 Hb_000260_180--Hb_012779_090 Hb_162275_050 Hb_162275_050 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000025_730 Hb_000025_730 Hb_000260_180--Hb_000025_730 Hb_001410_020--Hb_162275_050 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_001410_020--Hb_006588_210 Hb_001410_020--Hb_000025_730 Hb_000340_400 Hb_000340_400 Hb_006588_210--Hb_000340_400 Hb_004870_050 Hb_004870_050 Hb_006588_210--Hb_004870_050 Hb_000087_060 Hb_000087_060 Hb_006588_210--Hb_000087_060 Hb_002073_200 Hb_002073_200 Hb_006588_210--Hb_002073_200 Hb_012779_090--Hb_162275_050 Hb_002798_070 Hb_002798_070 Hb_012779_090--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_012779_090--Hb_000243_250 Hb_012194_030 Hb_012194_030 Hb_012779_090--Hb_012194_030 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005016_160 Hb_005016_160 Hb_005541_010--Hb_005016_160 Hb_003052_140 Hb_003052_140 Hb_005541_010--Hb_003052_140 Hb_000334_220 Hb_000334_220 Hb_005541_010--Hb_000334_220 Hb_012564_030 Hb_012564_030 Hb_005541_010--Hb_012564_030 Hb_002411_030 Hb_002411_030 Hb_005541_010--Hb_002411_030 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_000025_730--Hb_162275_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4324 69.4511 39.0622 31.8779 42.5261 24.979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.065 47.3955 37.6216 29.1619 22.0206

CAGE analysis