Hb_000260_200

Information

Type -
Description -
Location Contig260: 152459-154768
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26975: 152458-154961 , PASA_asmbl_26976: 152458-154559 , PASA_asmbl_26977: 152479-154282
cDNA
(Sanger)
(ID:Location)		 002_B22.ab1: 152458-154460 , 009_F16.ab1: 152479-153352 , 015_A05.ab1: 152471-154450 , 023_H01.ab1: 152486-154475 , 028_J17.ab1: 152458-154452 , 030_H06.ab1: 152458-154450 , 032_D18.ab1: 152479-154837 , 032_L08.ab1: 152458-154460 , 042_G11.ab1: 152479-153329 , 043_F06.ab1: 152475-154450 , 043_J14.ab1: 152479-154448 , 045_O12.ab1: 152458-154450

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_200 0.0 - - -
2 Hb_000163_210 0.07066401 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
3 Hb_002391_220 0.0750702543 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
4 Hb_000069_140 0.0814945854 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
5 Hb_001424_020 0.0831271835 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
6 Hb_001785_040 0.0891674414 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
7 Hb_012539_020 0.0897484758 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
8 Hb_001434_070 0.0906438904 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_000083_090 0.0930034596 - - immunophilin, putative [Ricinus communis]
10 Hb_120823_010 0.0956558748 - - -
11 Hb_000789_110 0.0974861044 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
12 Hb_002316_120 0.0979986768 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
13 Hb_000270_720 0.1005024711 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
14 Hb_000062_390 0.1005218853 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
15 Hb_001377_380 0.1024590499 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
16 Hb_000300_390 0.1042833299 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
17 Hb_000389_080 0.1054541572 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
18 Hb_004209_030 0.107554299 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
19 Hb_032969_030 0.108693328 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_000365_080 0.1093129545 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_200 Hb_000260_200 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000069_140 Hb_000069_140 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_000083_090 Hb_000083_090 Hb_000163_210--Hb_000083_090 Hb_000163_210--Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_000163_210--Hb_000389_080 Hb_005000_180 Hb_005000_180 Hb_000163_210--Hb_005000_180 Hb_000163_210--Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_000270_720 Hb_000270_720 Hb_002391_220--Hb_000270_720 Hb_000599_280 Hb_000599_280 Hb_002391_220--Hb_000599_280 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_000069_140--Hb_001424_020 Hb_000069_140--Hb_000270_720 Hb_005211_190 Hb_005211_190 Hb_001424_020--Hb_005211_190 Hb_000365_080 Hb_000365_080 Hb_001424_020--Hb_000365_080 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_001424_020--Hb_000083_090 Hb_001604_030 Hb_001604_030 Hb_001785_040--Hb_001604_030 Hb_002603_150 Hb_002603_150 Hb_001785_040--Hb_002603_150 Hb_032969_030 Hb_032969_030 Hb_001785_040--Hb_032969_030 Hb_000012_100 Hb_000012_100 Hb_001785_040--Hb_000012_100 Hb_089100_020 Hb_089100_020 Hb_001785_040--Hb_089100_020 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1721 11.2096 36.3366 44.9799 35.3739 45.489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
270.875 360.221 145.791 51.989 59.2365

CAGE analysis