Hb_000260_210

Information

Type -
Description -
Location Contig260: 157143-158048
Sequence    

Annotation

kegg
ID rcu:RCOM_0126320
description hypothetical protein
nr
ID XP_002531810.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0P1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126320 PE=4 SV=1
Gene Ontology
ID GO:0009987
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000300_220 0.1008939495 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
3 Hb_006472_050 0.1162405151 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
4 Hb_011457_090 0.1187362083 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
5 Hb_000329_180 0.1245266894 - - Auxin-induced protein X10A, putative [Ricinus communis]
6 Hb_011377_050 0.1298876598 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
7 Hb_002182_030 0.1304898363 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
8 Hb_011537_110 0.1321677661 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
9 Hb_001008_090 0.1339738243 - - cytochrome C oxidase, putative [Ricinus communis]
10 Hb_000140_050 0.1340364944 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
11 Hb_000322_140 0.1349926097 - - hypothetical protein RCOM_1047200 [Ricinus communis]
12 Hb_001096_110 0.1361813738 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_183961_010 0.1365960197 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
14 Hb_003687_150 0.1368994749 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
15 Hb_162275_030 0.1371595332 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
16 Hb_019516_080 0.1372055542 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006569_100 0.1409278983 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
18 Hb_068056_030 0.141051597 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
19 Hb_000069_550 0.1411588799 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
20 Hb_092107_010 0.1412026924 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000260_210 Hb_000260_210 Hb_000300_220 Hb_000300_220 Hb_000260_210--Hb_000300_220 Hb_006472_050 Hb_006472_050 Hb_000260_210--Hb_006472_050 Hb_011457_090 Hb_011457_090 Hb_000260_210--Hb_011457_090 Hb_000329_180 Hb_000329_180 Hb_000260_210--Hb_000329_180 Hb_011377_050 Hb_011377_050 Hb_000260_210--Hb_011377_050 Hb_002182_030 Hb_002182_030 Hb_000260_210--Hb_002182_030 Hb_001008_090 Hb_001008_090 Hb_000300_220--Hb_001008_090 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_011537_110 Hb_011537_110 Hb_000300_220--Hb_011537_110 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_000300_220--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010 Hb_006472_050--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060 Hb_011457_090--Hb_011537_110 Hb_011457_090--Hb_000224_120 Hb_011457_090--Hb_001153_060 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_000125_030 Hb_000125_030 Hb_000329_180--Hb_000125_030 Hb_003207_170 Hb_003207_170 Hb_000329_180--Hb_003207_170 Hb_000061_300 Hb_000061_300 Hb_000329_180--Hb_000061_300 Hb_061802_010 Hb_061802_010 Hb_000329_180--Hb_061802_010 Hb_001575_020 Hb_001575_020 Hb_000329_180--Hb_001575_020 Hb_000483_390 Hb_000483_390 Hb_011377_050--Hb_000483_390 Hb_114310_080 Hb_114310_080 Hb_011377_050--Hb_114310_080 Hb_000019_070 Hb_000019_070 Hb_011377_050--Hb_000019_070 Hb_000140_050 Hb_000140_050 Hb_011377_050--Hb_000140_050 Hb_011377_050--Hb_006472_050 Hb_003540_030 Hb_003540_030 Hb_011377_050--Hb_003540_030 Hb_002182_030--Hb_001135_210 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0062 2.40343 5.30743 20.0861 4.47189 13.4844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4285 30.1966 48.9236 5.60518 15.6702

CAGE analysis