Hb_000260_220

Information

Type -
Description -
Location Contig260: 162526-169573
Sequence    

Annotation

kegg
ID cit:102618818
description RING finger and transmembrane domain-containing protein 2-like
nr
ID XP_012090995.1
description PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q96EX2
description RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2
trembl
ID A0A067JDD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00624 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger and transmembrane domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26980: 162486-169545 , PASA_asmbl_26981: 162486-169545 , PASA_asmbl_26982: 167185-167312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_220 0.0 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_000031_220 0.0748987455 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
3 Hb_010931_120 0.076052138 - - myosin heavy chain-related family protein [Populus trichocarpa]
4 Hb_002054_040 0.0766616137 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
5 Hb_002374_050 0.0774684676 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
6 Hb_001663_030 0.0776571519 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
7 Hb_016657_010 0.0803399073 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
8 Hb_000003_480 0.0814186576 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
9 Hb_001936_020 0.0818300125 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
10 Hb_004689_050 0.0853650302 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000483_360 0.0866850033 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_106724_020 0.0913920067 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
13 Hb_002027_270 0.0951104316 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
14 Hb_004108_140 0.0960193229 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
15 Hb_002784_060 0.0967154266 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
16 Hb_000429_120 0.0967775229 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
17 Hb_005993_020 0.0982896809 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
18 Hb_006114_030 0.0984015588 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
19 Hb_002067_150 0.0988279419 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
20 Hb_007317_190 0.0992604404 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_220 Hb_000260_220 Hb_000031_220 Hb_000031_220 Hb_000260_220--Hb_000031_220 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_002982_040 Hb_002982_040 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_000031_220--Hb_002054_040 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_004055_030 Hb_004055_030 Hb_010931_120--Hb_004055_030 Hb_011671_430 Hb_011671_430 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_005993_020 Hb_005993_020 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_000166_110 Hb_000166_110 Hb_002054_040--Hb_000166_110 Hb_002054_040--Hb_002374_050 Hb_000134_090 Hb_000134_090 Hb_002054_040--Hb_000134_090 Hb_002054_040--Hb_002982_040 Hb_006114_030 Hb_006114_030 Hb_002374_050--Hb_006114_030 Hb_004689_050 Hb_004689_050 Hb_002374_050--Hb_004689_050 Hb_001124_160 Hb_001124_160 Hb_002374_050--Hb_001124_160 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_000577_010 Hb_000577_010 Hb_001663_030--Hb_000577_010 Hb_003994_240 Hb_003994_240 Hb_001663_030--Hb_003994_240 Hb_007163_090 Hb_007163_090 Hb_001663_030--Hb_007163_090 Hb_000802_080 Hb_000802_080 Hb_001663_030--Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_001663_030--Hb_001789_090 Hb_000046_440 Hb_000046_440 Hb_016657_010--Hb_000046_440 Hb_007317_190 Hb_007317_190 Hb_016657_010--Hb_007317_190 Hb_000522_090 Hb_000522_090 Hb_016657_010--Hb_000522_090 Hb_005977_090 Hb_005977_090 Hb_016657_010--Hb_005977_090 Hb_000556_020 Hb_000556_020 Hb_016657_010--Hb_000556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.9857 34.574 11.9153 27.8174 45.3847 67.9968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.1172 21.576 39.0882 42.4483 20.1895

CAGE analysis