Hb_000260_240

Information

Type -
Description -
Location Contig260: 175573-179835
Sequence    

Annotation

kegg
ID rcu:RCOM_0126450
description bromodomain-containing protein (EC:2.3.1.48)
nr
ID KDP21835.1
description hypothetical protein JCGZ_00622 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067JPA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00622 PE=4 SV=1
Gene Ontology
ID GO:0016740
description bromodomain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26983: 175628-176008 , PASA_asmbl_26984: 176162-177601 , PASA_asmbl_26985: 177859-178496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_240 0.0 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
2 Hb_008173_130 0.1209443918 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
3 Hb_107078_010 0.1331977571 - - -
4 Hb_001898_100 0.1434520903 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
5 Hb_001579_190 0.1483592063 - - conserved hypothetical protein [Ricinus communis]
6 Hb_034585_070 0.1486421054 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
7 Hb_001019_070 0.1619782527 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
8 Hb_000538_250 0.162979759 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
9 Hb_000110_240 0.1633441438 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
10 Hb_000392_240 0.1705692511 - - DNA binding protein, putative [Ricinus communis]
11 Hb_004846_230 0.17134482 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
12 Hb_000046_520 0.1717788583 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
13 Hb_001396_040 0.1748371541 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
14 Hb_006789_030 0.1751492378 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
15 Hb_000500_330 0.1758176749 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
16 Hb_011918_030 0.1784840606 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
17 Hb_007576_130 0.1795986338 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
18 Hb_008775_030 0.1806615059 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
19 Hb_010407_150 0.1807617713 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
20 Hb_028487_040 0.1820870868 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]

Gene co-expression network

sample Hb_000260_240 Hb_000260_240 Hb_008173_130 Hb_008173_130 Hb_000260_240--Hb_008173_130 Hb_107078_010 Hb_107078_010 Hb_000260_240--Hb_107078_010 Hb_001898_100 Hb_001898_100 Hb_000260_240--Hb_001898_100 Hb_001579_190 Hb_001579_190 Hb_000260_240--Hb_001579_190 Hb_034585_070 Hb_034585_070 Hb_000260_240--Hb_034585_070 Hb_001019_070 Hb_001019_070 Hb_000260_240--Hb_001019_070 Hb_011918_030 Hb_011918_030 Hb_008173_130--Hb_011918_030 Hb_008173_130--Hb_107078_010 Hb_000308_010 Hb_000308_010 Hb_008173_130--Hb_000308_010 Hb_028487_040 Hb_028487_040 Hb_008173_130--Hb_028487_040 Hb_003688_220 Hb_003688_220 Hb_008173_130--Hb_003688_220 Hb_107078_010--Hb_011918_030 Hb_001638_120 Hb_001638_120 Hb_107078_010--Hb_001638_120 Hb_000020_080 Hb_000020_080 Hb_107078_010--Hb_000020_080 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_000212_270 Hb_000212_270 Hb_001898_100--Hb_000212_270 Hb_001544_060 Hb_001544_060 Hb_001898_100--Hb_001544_060 Hb_003337_020 Hb_003337_020 Hb_001898_100--Hb_003337_020 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_000175_200 Hb_000175_200 Hb_001898_100--Hb_000175_200 Hb_001266_130 Hb_001266_130 Hb_001898_100--Hb_001266_130 Hb_000110_240 Hb_000110_240 Hb_001579_190--Hb_000110_240 Hb_008643_220 Hb_008643_220 Hb_001579_190--Hb_008643_220 Hb_000494_010 Hb_000494_010 Hb_001579_190--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_010683_070 Hb_010683_070 Hb_001579_190--Hb_010683_070 Hb_140000_010 Hb_140000_010 Hb_034585_070--Hb_140000_010 Hb_005599_020 Hb_005599_020 Hb_034585_070--Hb_005599_020 Hb_034585_070--Hb_006789_030 Hb_031685_010 Hb_031685_010 Hb_034585_070--Hb_031685_010 Hb_065256_010 Hb_065256_010 Hb_034585_070--Hb_065256_010 Hb_005888_050 Hb_005888_050 Hb_034585_070--Hb_005888_050 Hb_004846_230 Hb_004846_230 Hb_001019_070--Hb_004846_230 Hb_003549_130 Hb_003549_130 Hb_001019_070--Hb_003549_130 Hb_021443_030 Hb_021443_030 Hb_001019_070--Hb_021443_030 Hb_006788_090 Hb_006788_090 Hb_001019_070--Hb_006788_090 Hb_001019_070--Hb_008173_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0206565 1.00039 3.67393 0.355158 0.0443736 0.124714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209529 0.0164868 0.0939559 0.340867 1.11708

CAGE analysis