Hb_000260_270

Information

Type -
Description -
Location Contig260: 191587-196958
Sequence    

Annotation

kegg
ID rcu:RCOM_0126460
description zinc finger protein, putative
nr
ID XP_002531814.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9T0P5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0126460 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase praja-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_270 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000395_190 0.0531243147 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
3 Hb_005731_130 0.0648370247 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
4 Hb_011218_040 0.0695144934 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
5 Hb_004994_220 0.0715829126 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
6 Hb_000329_470 0.0723723948 - - ccr4-not transcription complex, putative [Ricinus communis]
7 Hb_002631_060 0.0738788007 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
8 Hb_000061_460 0.0740915606 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
9 Hb_000556_160 0.0753638749 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
10 Hb_002078_130 0.0767330807 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
11 Hb_004907_110 0.080521774 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
12 Hb_004355_020 0.0808533334 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
13 Hb_010128_080 0.0827995803 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
14 Hb_000203_160 0.084053191 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
15 Hb_005618_170 0.0849845626 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_000252_200 0.0852310429 - - conserved hypothetical protein [Ricinus communis]
17 Hb_089032_040 0.0856881285 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
18 Hb_003058_190 0.0857924294 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
19 Hb_005064_060 0.0864381434 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000866_170 0.0866822072 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_270 Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_000260_270--Hb_000395_190 Hb_005731_130 Hb_005731_130 Hb_000260_270--Hb_005731_130 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_005731_130--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_005731_130--Hb_000061_460 Hb_005731_130--Hb_089032_040 Hb_001143_160 Hb_001143_160 Hb_005731_130--Hb_001143_160 Hb_000629_010 Hb_000629_010 Hb_011218_040--Hb_000629_010 Hb_004355_020 Hb_004355_020 Hb_011218_040--Hb_004355_020 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_010174_110 Hb_010174_110 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_003158_010 Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_010883_090 Hb_010883_090 Hb_002631_060--Hb_010883_090 Hb_004907_110 Hb_004907_110 Hb_002631_060--Hb_004907_110 Hb_003376_350 Hb_003376_350 Hb_002631_060--Hb_003376_350 Hb_007416_320 Hb_007416_320 Hb_002631_060--Hb_007416_320 Hb_002631_060--Hb_000395_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17534 8.83156 2.43152 5.76286 8.42504 8.19348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.45314 9.05805 11.0592 9.71159 4.41459

CAGE analysis