Hb_000260_280

Information

Type -
Description -
Location Contig260: 197348-201919
Sequence    

Annotation

kegg
ID rcu:RCOM_0126470
description auxin:hydrogen symporter, putative
nr
ID XP_002531815.1
description auxin:hydrogen symporter, putative [Ricinus communis]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID B9T0P6
description Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_0126470 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_280 0.0 - - auxin:hydrogen symporter, putative [Ricinus communis]
2 Hb_032972_010 0.1279517492 - - Glycolipid transfer protein, putative [Ricinus communis]
3 Hb_025466_020 0.1460578615 - - tubulin beta-6 [Brassica oleracea var. italica]
4 Hb_000210_100 0.1606223091 - - pepsin A, putative [Ricinus communis]
5 Hb_001454_100 0.164815216 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
6 Hb_029920_020 0.1661077846 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
7 Hb_006903_030 0.1664364143 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
8 Hb_175933_010 0.1675011304 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
9 Hb_001486_270 0.1724590369 - - Ann10 [Manihot esculenta]
10 Hb_028049_010 0.1733751994 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_020805_140 0.1754560376 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
12 Hb_000217_010 0.1767078574 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
13 Hb_003878_050 0.1789508732 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
14 Hb_000382_020 0.1819299994 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
15 Hb_027073_010 0.1860080565 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
16 Hb_000192_020 0.1867904029 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
17 Hb_004007_110 0.1879539314 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
18 Hb_000796_020 0.1903889951 - - ADP-ribosylation factor [Phaseolus vulgaris]
19 Hb_000086_290 0.1917901987 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
20 Hb_002154_110 0.1918118812 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]

Gene co-expression network

sample Hb_000260_280 Hb_000260_280 Hb_032972_010 Hb_032972_010 Hb_000260_280--Hb_032972_010 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_000260_280--Hb_001454_100 Hb_029920_020 Hb_029920_020 Hb_000260_280--Hb_029920_020 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_175933_010 Hb_175933_010 Hb_032972_010--Hb_175933_010 Hb_000683_100 Hb_000683_100 Hb_032972_010--Hb_000683_100 Hb_000027_210 Hb_000027_210 Hb_032972_010--Hb_000027_210 Hb_001208_030 Hb_001208_030 Hb_032972_010--Hb_001208_030 Hb_001208_040 Hb_001208_040 Hb_032972_010--Hb_001208_040 Hb_025466_010 Hb_025466_010 Hb_025466_020--Hb_025466_010 Hb_025466_020--Hb_006903_030 Hb_048476_060 Hb_048476_060 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_025466_020--Hb_001454_100 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_000210_100--Hb_001454_100 Hb_000210_100--Hb_025466_020 Hb_069355_010 Hb_069355_010 Hb_000210_100--Hb_069355_010 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_020805_140 Hb_020805_140 Hb_000210_100--Hb_020805_140 Hb_000310_100 Hb_000310_100 Hb_001454_100--Hb_000310_100 Hb_016564_010 Hb_016564_010 Hb_001454_100--Hb_016564_010 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_000192_020 Hb_000192_020 Hb_029920_020--Hb_000192_020 Hb_012753_030 Hb_012753_030 Hb_029920_020--Hb_012753_030 Hb_029920_020--Hb_001454_100 Hb_001486_270 Hb_001486_270 Hb_029920_020--Hb_001486_270 Hb_006903_030--Hb_025466_010 Hb_006903_030--Hb_048476_060 Hb_026889_040 Hb_026889_040 Hb_006903_030--Hb_026889_040 Hb_000110_050 Hb_000110_050 Hb_006903_030--Hb_000110_050 Hb_000244_170 Hb_000244_170 Hb_006903_030--Hb_000244_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.318397 0.507183 1.32612 8.70827 0.0675221 0.220263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.37805 2.59862 2.70891 1.85538 1.79319

CAGE analysis