Hb_000260_300

Information

Type -
Description -
Location Contig260: 211516-212112
Sequence    

Annotation

kegg
ID rcu:RCOM_0126810
description calcium binding protein/cast, putative
nr
ID XP_002531819.1
description calcium binding protein/cast, putative [Ricinus communis]
swissprot
ID Q9SVG9
description Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1
trembl
ID B9T0Q0
description Calcium binding protein/cast, putative OS=Ricinus communis GN=RCOM_0126810 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein cml42-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_300 0.0 - - calcium binding protein/cast, putative [Ricinus communis]
2 Hb_124677_020 0.1077255881 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
3 Hb_006043_020 0.1226265999 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
4 Hb_155946_030 0.1319532715 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
5 Hb_005976_040 0.1386255749 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
6 Hb_018563_020 0.1414249948 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
7 Hb_000336_060 0.1439901174 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
8 Hb_007894_020 0.1454782051 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
9 Hb_022137_020 0.1459230243 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
10 Hb_002053_030 0.1468174629 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_031108_010 0.154501693 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
12 Hb_101058_020 0.1552735025 - - DWNN domain isoform 2 [Theobroma cacao]
13 Hb_000836_160 0.1564063673 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
14 Hb_158926_010 0.1586436636 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
15 Hb_000086_610 0.161101247 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
16 Hb_006538_030 0.1627720904 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
17 Hb_001579_070 0.1695534858 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
18 Hb_000532_030 0.1699043387 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
19 Hb_005348_090 0.1720166797 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
20 Hb_000345_500 0.1722694259 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_300 Hb_000260_300 Hb_124677_020 Hb_124677_020 Hb_000260_300--Hb_124677_020 Hb_006043_020 Hb_006043_020 Hb_000260_300--Hb_006043_020 Hb_155946_030 Hb_155946_030 Hb_000260_300--Hb_155946_030 Hb_005976_040 Hb_005976_040 Hb_000260_300--Hb_005976_040 Hb_018563_020 Hb_018563_020 Hb_000260_300--Hb_018563_020 Hb_000336_060 Hb_000336_060 Hb_000260_300--Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_002151_130 Hb_002151_130 Hb_124677_020--Hb_002151_130 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_124677_020--Hb_155946_030 Hb_002053_030 Hb_002053_030 Hb_006043_020--Hb_002053_030 Hb_006043_020--Hb_005976_040 Hb_000345_500 Hb_000345_500 Hb_006043_020--Hb_000345_500 Hb_006043_020--Hb_018563_020 Hb_006538_030 Hb_006538_030 Hb_006043_020--Hb_006538_030 Hb_001579_070 Hb_001579_070 Hb_155946_030--Hb_001579_070 Hb_000162_130 Hb_000162_130 Hb_155946_030--Hb_000162_130 Hb_031108_010 Hb_031108_010 Hb_155946_030--Hb_031108_010 Hb_007894_020 Hb_007894_020 Hb_155946_030--Hb_007894_020 Hb_005976_040--Hb_018563_020 Hb_005976_040--Hb_002053_030 Hb_000836_160 Hb_000836_160 Hb_005976_040--Hb_000836_160 Hb_005496_070 Hb_005496_070 Hb_005976_040--Hb_005496_070 Hb_000086_610 Hb_000086_610 Hb_018563_020--Hb_000086_610 Hb_018563_020--Hb_000836_160 Hb_018563_020--Hb_006538_030 Hb_000336_060--Hb_001999_170 Hb_010126_030 Hb_010126_030 Hb_000336_060--Hb_010126_030 Hb_000283_100 Hb_000283_100 Hb_000336_060--Hb_000283_100 Hb_000984_290 Hb_000984_290 Hb_000336_060--Hb_000984_290 Hb_000336_060--Hb_022137_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21308 164.397 102.132 68.0861 0.0881777 0.209015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.76631 16.1503 11.4579 9.24899 2.47362

CAGE analysis