Hb_000260_310

Information

Type -
Description -
Location Contig260: 214947-215582
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11330g
description hypothetical protein
nr
ID XP_012090978.1
description PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
swissprot
ID P85192
description Unknown protein 1 OS=Helianthus annuus PE=1 SV=1
trembl
ID A0A067JDC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00614 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26989: 214461-214890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_310 0.0 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
2 Hb_000264_020 0.0991943041 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
3 Hb_003504_020 0.1224974543 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
4 Hb_019654_090 0.1324304837 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
5 Hb_002053_060 0.1376723598 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
6 Hb_000373_180 0.1382452083 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
7 Hb_001514_230 0.1421461866 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
8 Hb_007429_030 0.1446746972 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
9 Hb_000099_130 0.1447471566 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
10 Hb_021409_160 0.1453568626 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
11 Hb_000125_030 0.148228087 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
12 Hb_000141_020 0.1491535948 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
13 Hb_001638_020 0.1506731413 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000165_010 0.1507428406 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
15 Hb_002798_050 0.1519142257 - - l-allo-threonine aldolase, putative [Ricinus communis]
16 Hb_003579_030 0.1521120852 - - phosphatase 2C family protein [Populus trichocarpa]
17 Hb_007645_080 0.152524025 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
18 Hb_005505_020 0.152857292 - - Potassium channel AKT1, putative [Ricinus communis]
19 Hb_007382_150 0.153003603 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_012545_050 0.1530530846 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000260_310 Hb_000260_310 Hb_000264_020 Hb_000264_020 Hb_000260_310--Hb_000264_020 Hb_003504_020 Hb_003504_020 Hb_000260_310--Hb_003504_020 Hb_019654_090 Hb_019654_090 Hb_000260_310--Hb_019654_090 Hb_002053_060 Hb_002053_060 Hb_000260_310--Hb_002053_060 Hb_000373_180 Hb_000373_180 Hb_000260_310--Hb_000373_180 Hb_001514_230 Hb_001514_230 Hb_000260_310--Hb_001514_230 Hb_000264_020--Hb_000373_180 Hb_146225_010 Hb_146225_010 Hb_000264_020--Hb_146225_010 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_001846_070 Hb_001846_070 Hb_000264_020--Hb_001846_070 Hb_002759_240 Hb_002759_240 Hb_000264_020--Hb_002759_240 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_000141_020 Hb_000141_020 Hb_003504_020--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_003504_020--Hb_000125_030 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_000019_060 Hb_000019_060 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_000072_080 Hb_000072_080 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040 Hb_016604_020 Hb_016604_020 Hb_002053_060--Hb_016604_020 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_000099_060 Hb_000099_060 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002182_060 Hb_002182_060 Hb_002053_060--Hb_002182_060 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_000373_180--Hb_146225_010 Hb_001894_170 Hb_001894_170 Hb_000373_180--Hb_001894_170 Hb_012053_050 Hb_012053_050 Hb_000373_180--Hb_012053_050 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_064997_010 Hb_064997_010 Hb_001514_230--Hb_064997_010 Hb_000377_060 Hb_000377_060 Hb_001514_230--Hb_000377_060 Hb_138585_060 Hb_138585_060 Hb_001514_230--Hb_138585_060 Hb_001638_020 Hb_001638_020 Hb_001514_230--Hb_001638_020 Hb_001514_230--Hb_016604_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.13156 6.01775 0.685505 3.91078 1.92948 4.62648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7531 21.1299 21.071 1.78696 1.9917

CAGE analysis