Hb_000260_330

Information

Type -
Description -
Location Contig260: 222660-224365
Sequence    

Annotation

kegg
ID mdm:103438625
description uncharacterized LOC103438625
nr
ID XP_008375381.1
description PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
swissprot
ID -
description -
trembl
ID B7FI82
description Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0010413
description PREDICTED: uncharacterized protein LOC105649056

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26992: 222680-232946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_330 0.0 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
2 Hb_000025_180 0.0524108109 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
3 Hb_028512_020 0.0565397901 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
4 Hb_000345_240 0.0598364484 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
5 Hb_002811_180 0.0615972599 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003683_020 0.0624821395 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_000923_010 0.062527025 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
8 Hb_003750_050 0.0649960436 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
9 Hb_003964_070 0.0736828301 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
10 Hb_002785_050 0.0744663487 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
11 Hb_001882_050 0.074631078 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
12 Hb_000120_670 0.0754530407 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
13 Hb_000617_100 0.0768197071 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
14 Hb_003671_010 0.0780757232 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
15 Hb_001635_090 0.0781996669 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
16 Hb_013738_020 0.0788451096 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_012322_020 0.0801578837 - - -
18 Hb_000035_470 0.0802658943 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_013399_020 0.080714125 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
20 Hb_000603_150 0.081350772 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000260_330 Hb_000260_330 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_003683_020 Hb_003683_020 Hb_000260_330--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010 Hb_172632_120 Hb_172632_120 Hb_000025_180--Hb_172632_120 Hb_003750_050 Hb_003750_050 Hb_000025_180--Hb_003750_050 Hb_013738_020 Hb_013738_020 Hb_000025_180--Hb_013738_020 Hb_000603_150 Hb_000603_150 Hb_000025_180--Hb_000603_150 Hb_000025_180--Hb_002811_180 Hb_002026_210 Hb_002026_210 Hb_028512_020--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_028512_020--Hb_004109_230 Hb_001860_030 Hb_001860_030 Hb_028512_020--Hb_001860_030 Hb_028512_020--Hb_000923_010 Hb_014361_070 Hb_014361_070 Hb_028512_020--Hb_014361_070 Hb_000120_670 Hb_000120_670 Hb_000345_240--Hb_000120_670 Hb_003964_070 Hb_003964_070 Hb_000345_240--Hb_003964_070 Hb_000345_240--Hb_003750_050 Hb_000617_180 Hb_000617_180 Hb_000345_240--Hb_000617_180 Hb_004414_060 Hb_004414_060 Hb_000345_240--Hb_004414_060 Hb_002811_180--Hb_003750_050 Hb_000621_010 Hb_000621_010 Hb_002811_180--Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_002811_180--Hb_008847_030 Hb_000392_430 Hb_000392_430 Hb_002811_180--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_002811_180--Hb_000111_320 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000923_010--Hb_013399_020 Hb_000029_300 Hb_000029_300 Hb_000923_010--Hb_000029_300 Hb_000083_120 Hb_000083_120 Hb_000923_010--Hb_000083_120 Hb_000923_010--Hb_002026_210 Hb_000340_530 Hb_000340_530 Hb_000923_010--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2562 3.78749 3.60545 6.69792 5.88878 5.70013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61486 4.91439 3.58473 5.14683 3.31987

CAGE analysis