Hb_000260_350

Information

Type -
Description -
Location Contig260: 228672-232978
Sequence    

Annotation

kegg
ID rcu:RCOM_1323040
description hypothetical protein
nr
ID XP_002519972.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1V3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1323040 PE=4 SV=1
Gene Ontology
ID GO:0005739
description af428345_1 at3g54190 f24b22_150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26992: 222680-232946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001511_060 0.0485952643 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
3 Hb_000349_260 0.0486061273 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
4 Hb_004990_010 0.0545045369 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
5 Hb_093458_040 0.0549152526 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
6 Hb_005054_110 0.0551057471 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
7 Hb_168978_010 0.0582547057 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
8 Hb_002641_060 0.0594244422 - - prefoldin subunit, putative [Ricinus communis]
9 Hb_013575_010 0.0596091754 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
10 Hb_149985_010 0.059852607 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
11 Hb_002110_190 0.0607469039 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
12 Hb_003025_100 0.0639817229 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
13 Hb_012498_010 0.0642771802 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
14 Hb_008847_030 0.0653000121 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
15 Hb_000200_020 0.0671190558 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
16 Hb_006831_140 0.0671847965 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_004109_080 0.0672514659 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
18 Hb_000116_270 0.0677518935 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
19 Hb_022115_020 0.067972491 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
20 Hb_004109_220 0.068217403 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]

Gene co-expression network

sample Hb_000260_350 Hb_000260_350 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_004990_010--Hb_093458_040 Hb_002989_020 Hb_002989_020 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_168978_010--Hb_000359_060 Hb_168978_010--Hb_093458_040 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.26483 8.51057 10.1893 14.7457 9.55514 10.085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2633 12.5762 12.7311 10.7963 10.9501

CAGE analysis