Hb_000260_370

Information

Type -
Description -
Location Contig260: 240734-244539
Sequence    

Annotation

kegg
ID rcu:RCOM_1323050
description protein phosphatase-1, putative (EC:3.1.3.16)
nr
ID XP_002519973.1
description protein phosphatase-1, putative [Ricinus communis]
swissprot
ID P48480
description Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia peniculus PE=3 SV=1
trembl
ID B9S1V4
description Serine/threonine-protein phosphatase OS=Ricinus communis GN=RCOM_1323050 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26993: 240814-244553 , PASA_asmbl_26994: 245257-247571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_370 0.0 - - protein phosphatase-1, putative [Ricinus communis]
2 Hb_002965_030 0.1403638039 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
3 Hb_004296_010 0.164527457 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
4 Hb_002999_060 0.1683678746 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
5 Hb_000422_110 0.1764449309 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
6 Hb_006618_040 0.1806616033 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
7 Hb_013394_060 0.1821784898 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
8 Hb_186857_010 0.1827036632 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_030827_060 0.1837598723 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
10 Hb_000317_150 0.1866159366 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
11 Hb_013818_030 0.1869774312 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000735_100 0.190075641 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
13 Hb_000116_510 0.1903368212 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
14 Hb_000941_140 0.1907486643 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
15 Hb_001946_240 0.19127056 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
16 Hb_003858_090 0.1916845502 - - Filamin-A-interacting protein, putative [Ricinus communis]
17 Hb_000661_020 0.1920476082 - - BnaC08g27190D [Brassica napus]
18 Hb_010417_060 0.1939916815 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
19 Hb_001301_090 0.1943704048 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002918_310 0.1964095335 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000260_370 Hb_000260_370 Hb_002965_030 Hb_002965_030 Hb_000260_370--Hb_002965_030 Hb_004296_010 Hb_004296_010 Hb_000260_370--Hb_004296_010 Hb_002999_060 Hb_002999_060 Hb_000260_370--Hb_002999_060 Hb_000422_110 Hb_000422_110 Hb_000260_370--Hb_000422_110 Hb_006618_040 Hb_006618_040 Hb_000260_370--Hb_006618_040 Hb_013394_060 Hb_013394_060 Hb_000260_370--Hb_013394_060 Hb_000735_100 Hb_000735_100 Hb_002965_030--Hb_000735_100 Hb_000720_070 Hb_000720_070 Hb_002965_030--Hb_000720_070 Hb_002965_030--Hb_013394_060 Hb_002896_060 Hb_002896_060 Hb_002965_030--Hb_002896_060 Hb_002965_030--Hb_002999_060 Hb_001946_240 Hb_001946_240 Hb_002965_030--Hb_001946_240 Hb_000941_140 Hb_000941_140 Hb_004296_010--Hb_000941_140 Hb_004296_010--Hb_006618_040 Hb_001269_310 Hb_001269_310 Hb_004296_010--Hb_001269_310 Hb_004296_010--Hb_002999_060 Hb_004296_010--Hb_013394_060 Hb_002999_060--Hb_013394_060 Hb_030827_060 Hb_030827_060 Hb_002999_060--Hb_030827_060 Hb_002999_060--Hb_000720_070 Hb_000483_380 Hb_000483_380 Hb_002999_060--Hb_000483_380 Hb_002999_060--Hb_000422_110 Hb_013749_020 Hb_013749_020 Hb_000422_110--Hb_013749_020 Hb_007813_030 Hb_007813_030 Hb_000422_110--Hb_007813_030 Hb_002073_280 Hb_002073_280 Hb_000422_110--Hb_002073_280 Hb_000422_110--Hb_030827_060 Hb_000574_510 Hb_000574_510 Hb_000422_110--Hb_000574_510 Hb_000544_060 Hb_000544_060 Hb_000422_110--Hb_000544_060 Hb_001232_100 Hb_001232_100 Hb_006618_040--Hb_001232_100 Hb_000334_170 Hb_000334_170 Hb_006618_040--Hb_000334_170 Hb_000343_110 Hb_000343_110 Hb_006618_040--Hb_000343_110 Hb_006618_040--Hb_000941_140 Hb_002400_230 Hb_002400_230 Hb_006618_040--Hb_002400_230 Hb_013394_060--Hb_000483_380 Hb_013394_060--Hb_000720_070 Hb_013394_060--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_013394_060--Hb_000538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1406 21.0631 8.35944 9.68728 35.3699 6.63143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84504 3.77389 2.2752 4.38609 10.2967

CAGE analysis