Hb_000260_380

Information

Type -
Description -
Location Contig260: 245509-247526
Sequence    

Annotation

kegg
ID rcu:RCOM_1323160
description CDK, putative (EC:2.7.11.23)
nr
ID XP_012090971.1
description PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
swissprot
ID Q2V419
description Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2
trembl
ID A0A067JD95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00608 PE=4 SV=1
Gene Ontology
ID GO:0016772
description cell division control protein 2 homolog c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26994: 245257-247571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_380 0.0 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
2 Hb_000297_210 0.1252981748 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
3 Hb_005542_150 0.1291194828 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
4 Hb_001348_100 0.1320112794 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
5 Hb_001999_160 0.1332208875 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
6 Hb_003666_070 0.1343820554 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
7 Hb_000638_240 0.1357196798 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
8 Hb_001863_010 0.1372363872 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
9 Hb_004531_080 0.1397300496 - - hypothetical protein RCOM_1491960 [Ricinus communis]
10 Hb_001524_120 0.1406886946 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
11 Hb_003813_090 0.14445631 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
12 Hb_003228_050 0.1444940568 - - chromomethylase [Hevea brasiliensis]
13 Hb_000120_340 0.1468375916 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_000739_170 0.1493561433 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
15 Hb_011671_050 0.1494435648 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
16 Hb_005305_160 0.149635978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005675_050 0.1502693954 - - alpha-glucosidase, putative [Ricinus communis]
18 Hb_004129_060 0.1518355395 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_168918_010 0.1520192176 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_000020_050 0.1529076462 - - PREDICTED: expansin-A6 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_380 Hb_000260_380 Hb_000297_210 Hb_000297_210 Hb_000260_380--Hb_000297_210 Hb_005542_150 Hb_005542_150 Hb_000260_380--Hb_005542_150 Hb_001348_100 Hb_001348_100 Hb_000260_380--Hb_001348_100 Hb_001999_160 Hb_001999_160 Hb_000260_380--Hb_001999_160 Hb_003666_070 Hb_003666_070 Hb_000260_380--Hb_003666_070 Hb_000638_240 Hb_000638_240 Hb_000260_380--Hb_000638_240 Hb_004122_010 Hb_004122_010 Hb_000297_210--Hb_004122_010 Hb_005181_170 Hb_005181_170 Hb_000297_210--Hb_005181_170 Hb_007632_160 Hb_007632_160 Hb_000297_210--Hb_007632_160 Hb_000297_210--Hb_001348_100 Hb_005675_050 Hb_005675_050 Hb_000297_210--Hb_005675_050 Hb_005276_190 Hb_005276_190 Hb_000297_210--Hb_005276_190 Hb_003106_090 Hb_003106_090 Hb_005542_150--Hb_003106_090 Hb_005542_150--Hb_001999_160 Hb_000345_450 Hb_000345_450 Hb_005542_150--Hb_000345_450 Hb_033041_010 Hb_033041_010 Hb_005542_150--Hb_033041_010 Hb_000085_360 Hb_000085_360 Hb_005542_150--Hb_000085_360 Hb_101133_050 Hb_101133_050 Hb_005542_150--Hb_101133_050 Hb_000522_160 Hb_000522_160 Hb_001348_100--Hb_000522_160 Hb_006693_010 Hb_006693_010 Hb_001348_100--Hb_006693_010 Hb_159809_040 Hb_159809_040 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_006810_040 Hb_006810_040 Hb_001348_100--Hb_006810_040 Hb_002081_060 Hb_002081_060 Hb_001999_160--Hb_002081_060 Hb_000954_040 Hb_000954_040 Hb_001999_160--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_001999_160--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001999_160--Hb_002700_030 Hb_003228_050 Hb_003228_050 Hb_001999_160--Hb_003228_050 Hb_000120_340 Hb_000120_340 Hb_003666_070--Hb_000120_340 Hb_003666_070--Hb_005675_050 Hb_168918_010 Hb_168918_010 Hb_003666_070--Hb_168918_010 Hb_004592_010 Hb_004592_010 Hb_003666_070--Hb_004592_010 Hb_003666_070--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_003666_070--Hb_011671_050 Hb_000638_240--Hb_005542_150 Hb_000576_140 Hb_000576_140 Hb_000638_240--Hb_000576_140 Hb_000638_240--Hb_001999_160 Hb_003109_010 Hb_003109_010 Hb_000638_240--Hb_003109_010 Hb_000638_240--Hb_003106_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241333 0.212577 4.92398 4.0228 0.0205619 0.0241815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200953 0.0395124 0 0.953225 1.53659

CAGE analysis