Hb_000260_410

Information

Type -
Description -
Location Contig260: 261553-262787
Sequence    

Annotation

kegg
ID rcu:RCOM_1323280
description GTP binding protein, putative
nr
ID XP_012090968.1
description PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
swissprot
ID Q9ZVI6
description Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1
trembl
ID A0A067JQK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00606 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26997: 261544-262748 , PASA_asmbl_26998: 262352-262459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_410 0.0 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
2 Hb_000173_270 0.0705825066 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
3 Hb_017491_010 0.0840345279 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
4 Hb_000272_030 0.0904489491 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
5 Hb_001629_120 0.093085166 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
6 Hb_000941_090 0.0932563574 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
7 Hb_000818_090 0.0964085565 - - glutamate receptor 3 plant, putative [Ricinus communis]
8 Hb_044653_050 0.0964141843 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
9 Hb_005365_010 0.0983375202 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
10 Hb_006570_060 0.0996454815 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
11 Hb_003071_050 0.1007008483 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
12 Hb_006478_050 0.1025482354 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
13 Hb_004880_050 0.1083682265 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002838_010 0.1103583399 - - AGPase large subunit protein [Hevea brasiliensis]
15 Hb_001143_120 0.1110580146 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
16 Hb_001789_120 0.1151491996 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
17 Hb_007894_120 0.115461606 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_007130_020 0.1163661345 - - -
19 Hb_000500_230 0.1204710984 - - hypothetical protein RCOM_0634810 [Ricinus communis]
20 Hb_001352_030 0.1219585234 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_410 Hb_000260_410 Hb_000173_270 Hb_000173_270 Hb_000260_410--Hb_000173_270 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_000272_030 Hb_000272_030 Hb_000260_410--Hb_000272_030 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000941_090 Hb_000941_090 Hb_000260_410--Hb_000941_090 Hb_000818_090 Hb_000818_090 Hb_000260_410--Hb_000818_090 Hb_005365_010 Hb_005365_010 Hb_000173_270--Hb_005365_010 Hb_000173_270--Hb_001629_120 Hb_006570_060 Hb_006570_060 Hb_000173_270--Hb_006570_060 Hb_044653_050 Hb_044653_050 Hb_000173_270--Hb_044653_050 Hb_000173_270--Hb_000272_030 Hb_007894_120 Hb_007894_120 Hb_017491_010--Hb_007894_120 Hb_017491_010--Hb_044653_050 Hb_003071_050 Hb_003071_050 Hb_017491_010--Hb_003071_050 Hb_000500_230 Hb_000500_230 Hb_017491_010--Hb_000500_230 Hb_017491_010--Hb_000818_090 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_001629_120--Hb_005365_010 Hb_001629_120--Hb_000818_090 Hb_000023_130 Hb_000023_130 Hb_001629_120--Hb_000023_130 Hb_000185_170 Hb_000185_170 Hb_001629_120--Hb_000185_170 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010 Hb_000941_090--Hb_002838_010 Hb_001417_060 Hb_001417_060 Hb_000941_090--Hb_001417_060 Hb_031862_120 Hb_031862_120 Hb_000941_090--Hb_031862_120 Hb_001789_120 Hb_001789_120 Hb_000941_090--Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297517 21.7206 32.2686 25.6741 0.384458 0.278508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.807893 0.535144 0.0620916 4.74654 34.2558

CAGE analysis