Hb_000260_470

Information

Type -
Description -
Location Contig260: 292201-303031
Sequence    

Annotation

kegg
ID rcu:RCOM_1323430
description hypothetical protein
nr
ID XP_012090959.1
description PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JGB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00600 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105649044

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27007: 292267-303276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_470 0.0 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
2 Hb_005271_040 0.0609174204 - - PREDICTED: serine racemase [Jatropha curcas]
3 Hb_001660_100 0.0655617343 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
4 Hb_006570_160 0.0694430159 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
5 Hb_159809_070 0.0740465813 - - phospholipase A-2-activating protein, putative [Ricinus communis]
6 Hb_079526_040 0.0740863459 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
7 Hb_000392_420 0.074109076 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
8 Hb_003058_120 0.0764359413 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
9 Hb_000663_060 0.0773925189 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
10 Hb_000076_220 0.0803044186 - - thioredoxin domain-containing protein, putative [Ricinus communis]
11 Hb_000778_010 0.081628515 - - hypothetical protein [Bacillus subtilis]
12 Hb_000774_020 0.0817754119 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
13 Hb_000853_150 0.0847704158 - - Fumarase 1 isoform 2 [Theobroma cacao]
14 Hb_007894_150 0.0863137919 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
15 Hb_001828_180 0.0866692629 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
16 Hb_163175_010 0.0868451553 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
17 Hb_004545_110 0.0886464406 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
18 Hb_000963_040 0.0898170329 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
19 Hb_006189_020 0.0899858026 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
20 Hb_005634_010 0.0905150758 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_470 Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_000260_470--Hb_005271_040 Hb_001660_100 Hb_001660_100 Hb_000260_470--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_000260_470--Hb_006570_160 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000392_420 Hb_000392_420 Hb_000260_470--Hb_000392_420 Hb_000875_080 Hb_000875_080 Hb_005271_040--Hb_000875_080 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_002272_050 Hb_002272_050 Hb_005271_040--Hb_002272_050 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001369_300 Hb_001369_300 Hb_001660_100--Hb_001369_300 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_011282_060 Hb_011282_060 Hb_006570_160--Hb_011282_060 Hb_006570_160--Hb_005271_040 Hb_010407_140 Hb_010407_140 Hb_006570_160--Hb_010407_140 Hb_002676_120 Hb_002676_120 Hb_006570_160--Hb_002676_120 Hb_000666_100 Hb_000666_100 Hb_006570_160--Hb_000666_100 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_159809_070--Hb_079526_040 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_001518_080 Hb_001518_080 Hb_079526_040--Hb_001518_080 Hb_079526_040--Hb_000078_140 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_164390_010 Hb_164390_010 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63701 5.84024 14.7046 13.3447 6.89181 5.91539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.31376 7.80735 8.67892 11.8543 8.44869

CAGE analysis