Hb_000260_490

Information

Type -
Description -
Location Contig260: 339175-342358
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11520g
description hypothetical protein
nr
ID XP_012090956.1
description PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
swissprot
ID Q9ZVI7
description Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2
trembl
ID A0A067JP82
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_00597 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27011: 338531-353404
cDNA
(Sanger)
(ID:Location)		 010_J23.ab1: 339390-351434

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_490 0.0 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
2 Hb_000042_110 0.0788240409 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
3 Hb_003687_080 0.0892479598 - - PREDICTED: casein kinase I-like [Jatropha curcas]
4 Hb_007919_110 0.0931038655 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
5 Hb_074399_010 0.0945353448 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
6 Hb_002686_300 0.1039310519 - - adenosine diphosphatase, putative [Ricinus communis]
7 Hb_005511_130 0.1045293729 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
8 Hb_000258_220 0.1049346082 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
9 Hb_000915_130 0.1081691282 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
10 Hb_001160_110 0.1098934233 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
11 Hb_000968_060 0.1126003283 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_002249_020 0.1148993019 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
13 Hb_000001_090 0.1157637958 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
14 Hb_029584_120 0.1179289989 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
15 Hb_000703_160 0.1193170596 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
16 Hb_003449_100 0.1197428932 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
17 Hb_004013_030 0.1205897918 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
18 Hb_004003_030 0.1209956398 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002217_320 0.1226152531 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
20 Hb_005357_110 0.1234343368 - - hypothetical protein B456_002G083000 [Gossypium raimondii]

Gene co-expression network

sample Hb_000260_490 Hb_000260_490 Hb_000042_110 Hb_000042_110 Hb_000260_490--Hb_000042_110 Hb_003687_080 Hb_003687_080 Hb_000260_490--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_000260_490--Hb_007919_110 Hb_074399_010 Hb_074399_010 Hb_000260_490--Hb_074399_010 Hb_002686_300 Hb_002686_300 Hb_000260_490--Hb_002686_300 Hb_005511_130 Hb_005511_130 Hb_000260_490--Hb_005511_130 Hb_001847_060 Hb_001847_060 Hb_000042_110--Hb_001847_060 Hb_000915_130 Hb_000915_130 Hb_000042_110--Hb_000915_130 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000968_060 Hb_000968_060 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020 Hb_001160_110 Hb_001160_110 Hb_003687_080--Hb_001160_110 Hb_000327_330 Hb_000327_330 Hb_003687_080--Hb_000327_330 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_003687_080--Hb_005511_130 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220 Hb_003449_100 Hb_003449_100 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_000258_220 Hb_000258_220 Hb_074399_010--Hb_000258_220 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_002686_300--Hb_003687_080 Hb_006846_170 Hb_006846_170 Hb_002686_300--Hb_006846_170 Hb_002686_300--Hb_004013_030 Hb_002249_020 Hb_002249_020 Hb_002686_300--Hb_002249_020 Hb_003228_100 Hb_003228_100 Hb_002686_300--Hb_003228_100 Hb_004730_020 Hb_004730_020 Hb_005511_130--Hb_004730_020 Hb_000032_410 Hb_000032_410 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_005511_130--Hb_000915_130 Hb_005357_110 Hb_005357_110 Hb_005511_130--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5395 6.90154 16.0454 15.3887 3.97485 3.15453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51172 1.31532 3.91535 3.045 8.0204

CAGE analysis