Hb_000260_560

Information

Type -
Description -
Location Contig260: 377340-384232
Sequence    

Annotation

kegg
ID rcu:RCOM_1323890
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090946.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
swissprot
ID Q5G1S8
description Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
trembl
ID A0A067JQJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00586 PE=4 SV=1
Gene Ontology
ID GO:0004553
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27017: 377980-378482 , PASA_asmbl_27019: 378740-380767 , PASA_asmbl_27021: 380784-381139 , PASA_asmbl_27025: 383616-384016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_560 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
2 Hb_000958_070 0.0623711759 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
3 Hb_002233_130 0.0738080074 - - transporter, putative [Ricinus communis]
4 Hb_000573_060 0.0741946102 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
5 Hb_000086_150 0.0744908758 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
6 Hb_001244_150 0.0812763 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
7 Hb_009486_080 0.0828569409 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
8 Hb_000334_170 0.0858639088 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
9 Hb_002641_130 0.0885789718 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
10 Hb_002636_110 0.0916049007 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
11 Hb_007305_020 0.0927530307 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
12 Hb_011344_020 0.0953740395 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
13 Hb_002328_040 0.0976024161 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
14 Hb_004631_150 0.0993369295 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
15 Hb_000376_060 0.0998426792 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
16 Hb_000082_070 0.105592794 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
17 Hb_001232_100 0.1068299755 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_002600_060 0.10689089 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
19 Hb_000608_300 0.1079175865 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
20 Hb_000343_110 0.1088716695 - - Heat shock 70 kDa protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_560 Hb_000260_560 Hb_000958_070 Hb_000958_070 Hb_000260_560--Hb_000958_070 Hb_002233_130 Hb_002233_130 Hb_000260_560--Hb_002233_130 Hb_000573_060 Hb_000573_060 Hb_000260_560--Hb_000573_060 Hb_000086_150 Hb_000086_150 Hb_000260_560--Hb_000086_150 Hb_001244_150 Hb_001244_150 Hb_000260_560--Hb_001244_150 Hb_009486_080 Hb_009486_080 Hb_000260_560--Hb_009486_080 Hb_011344_020 Hb_011344_020 Hb_000958_070--Hb_011344_020 Hb_004631_150 Hb_004631_150 Hb_000958_070--Hb_004631_150 Hb_000958_070--Hb_002233_130 Hb_162275_040 Hb_162275_040 Hb_000958_070--Hb_162275_040 Hb_006355_020 Hb_006355_020 Hb_000958_070--Hb_006355_020 Hb_002233_130--Hb_001244_150 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_002641_130 Hb_002641_130 Hb_000573_060--Hb_002641_130 Hb_000573_060--Hb_001244_150 Hb_000573_060--Hb_000086_150 Hb_000573_060--Hb_009486_080 Hb_001001_150 Hb_001001_150 Hb_000573_060--Hb_001001_150 Hb_000086_150--Hb_007305_020 Hb_000086_150--Hb_009486_080 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000086_150--Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300 Hb_009486_080--Hb_002641_130 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80785 5.83394 4.96758 3.34793 7.95712 4.54433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68458 1.59835 2.54256 3.26227 8.3935

CAGE analysis