Hb_000260_580

Information

Type -
Description -
Location Contig260: 391728-395216
Sequence    

Annotation

kegg
ID rcu:RCOM_1323920
description hypothetical protein
nr
ID XP_002520000.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Y1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1323920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27029: 391293-395303
cDNA
(Sanger)
(ID:Location)		 001_F19.ab1: 391496-395303 , 002_E23.ab1: 391494-395303 , 002_M06.ab1: 391496-395303 , 006_K10.ab1: 391494-395299 , 009_E18.ab1: 391483-395303 , 009_G01.ab1: 391496-395298 , 010_B12.ab1: 391624-395298 , 013_A09.ab1: 391498-395303 , 014_F21.ab1: 391496-395301 , 017_G11.ab1: 391494-395299 , 017_H03.ab1: 391496-395298 , 023_K19.ab1: 391636-395299 , 025_E02.ab1: 391496-395301 , 025_O07.ab1: 391496-395303 , 031_N17.ab1: 391493-395303 , 031_O18.ab1: 391494-395299 , 033_J13.ab1: 391495-395303 , 033_K01.ab1: 391495-391969 , 034_J13.ab1: 391496-395301 , 036_L21.ab1: 391496-395301 , 037_B19.ab1: 391494-395301 , 038_A18.ab1: 391494-395303 , 038_E19.ab1: 391494-395303 , 041_M14.ab1: 391518-395301 , 044_J14.ab1: 391496-395303 , 048_L23.ab1: 391496-395301 , 052_P11.ab1: 391518-395301

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_580 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000175_610 0.114224491 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
3 Hb_003371_100 0.1144705996 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
4 Hb_029243_040 0.1214283868 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
5 Hb_001507_070 0.1304473222 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_270 0.1347268556 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
7 Hb_011004_010 0.1351722628 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
8 Hb_001278_050 0.1391327954 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
9 Hb_148121_010 0.1401437041 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009265_060 0.1461877242 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
11 Hb_000032_040 0.1466680004 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_002014_160 0.1493175038 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
13 Hb_005000_160 0.1503563749 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
14 Hb_000922_100 0.1520661491 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
15 Hb_001329_210 0.1543214492 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_001213_120 0.1545751816 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
17 Hb_000215_180 0.15533893 - - hypothetical protein 17 [Hevea brasiliensis]
18 Hb_002182_090 0.1595211004 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
19 Hb_024714_060 0.1608281195 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
20 Hb_002659_040 0.1627666799 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_580 Hb_000260_580 Hb_000175_610 Hb_000175_610 Hb_000260_580--Hb_000175_610 Hb_003371_100 Hb_003371_100 Hb_000260_580--Hb_003371_100 Hb_029243_040 Hb_029243_040 Hb_000260_580--Hb_029243_040 Hb_001507_070 Hb_001507_070 Hb_000260_580--Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_000260_580--Hb_000742_270 Hb_011004_010 Hb_011004_010 Hb_000260_580--Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000175_610--Hb_003371_100 Hb_000175_610--Hb_000742_270 Hb_000175_610--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000175_610--Hb_148121_010 Hb_003371_100--Hb_001507_070 Hb_005000_160 Hb_005000_160 Hb_003371_100--Hb_005000_160 Hb_003371_100--Hb_011004_010 Hb_003371_100--Hb_000742_270 Hb_001279_130 Hb_001279_130 Hb_029243_040--Hb_001279_130 Hb_000896_120 Hb_000896_120 Hb_029243_040--Hb_000896_120 Hb_001832_120 Hb_001832_120 Hb_029243_040--Hb_001832_120 Hb_000215_180 Hb_000215_180 Hb_029243_040--Hb_000215_180 Hb_002182_090 Hb_002182_090 Hb_029243_040--Hb_002182_090 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_011004_010 Hb_001507_070--Hb_148121_010 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_000742_270--Hb_148121_010 Hb_000742_270--Hb_000032_040 Hb_000742_270--Hb_011004_010 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_011004_010--Hb_000032_040 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
692.474 227.639 36.5294 257.083 277.441 182.324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2406.28 1404.79 1742.11 390.436 44.7636

CAGE analysis