Hb_000260_590

Information

Type -
Description -
Location Contig260: 437365-439466
Sequence    

Annotation

kegg
ID rcu:RCOM_1324230
description electron transporter, putative
nr
ID XP_002520001.1
description electron transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Y2
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1324230 PE=4 SV=1
Gene Ontology
ID GO:0009535
description rubredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27031: 437252-439987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_590 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_000088_150 0.1658588892 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
3 Hb_005479_010 0.1744503025 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
4 Hb_000505_080 0.1852907305 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
5 Hb_000866_340 0.1866490556 - - DNA binding protein, putative [Ricinus communis]
6 Hb_005063_080 0.1869613819 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_004542_020 0.1871879306 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
8 Hb_000603_270 0.193550256 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
9 Hb_000340_410 0.1961435668 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_188063_030 0.1996123677 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
11 Hb_002498_170 0.2007740654 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_015531_030 0.2016841023 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001907_070 0.2048090096 - - 50S ribosomal protein L1p, putative [Ricinus communis]
14 Hb_001221_200 0.2062392443 - - -
15 Hb_001793_050 0.2110435508 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
16 Hb_006911_070 0.2160979521 - - 50S ribosomal protein L1p, putative [Ricinus communis]
17 Hb_000152_490 0.2174184228 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
18 Hb_005618_150 0.2184633658 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
19 Hb_004846_050 0.2203513226 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
20 Hb_000317_450 0.2209419318 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_590 Hb_000260_590 Hb_000088_150 Hb_000088_150 Hb_000260_590--Hb_000088_150 Hb_005479_010 Hb_005479_010 Hb_000260_590--Hb_005479_010 Hb_000505_080 Hb_000505_080 Hb_000260_590--Hb_000505_080 Hb_000866_340 Hb_000866_340 Hb_000260_590--Hb_000866_340 Hb_005063_080 Hb_005063_080 Hb_000260_590--Hb_005063_080 Hb_004542_020 Hb_004542_020 Hb_000260_590--Hb_004542_020 Hb_001221_200 Hb_001221_200 Hb_000088_150--Hb_001221_200 Hb_000505_050 Hb_000505_050 Hb_000088_150--Hb_000505_050 Hb_000088_150--Hb_000866_340 Hb_007504_030 Hb_007504_030 Hb_000088_150--Hb_007504_030 Hb_000603_270 Hb_000603_270 Hb_000088_150--Hb_000603_270 Hb_001793_050 Hb_001793_050 Hb_005479_010--Hb_001793_050 Hb_002097_100 Hb_002097_100 Hb_005479_010--Hb_002097_100 Hb_001976_060 Hb_001976_060 Hb_005479_010--Hb_001976_060 Hb_001623_080 Hb_001623_080 Hb_005479_010--Hb_001623_080 Hb_001195_130 Hb_001195_130 Hb_005479_010--Hb_001195_130 Hb_000815_230 Hb_000815_230 Hb_000505_080--Hb_000815_230 Hb_002471_110 Hb_002471_110 Hb_000505_080--Hb_002471_110 Hb_001675_050 Hb_001675_050 Hb_000505_080--Hb_001675_050 Hb_010344_030 Hb_010344_030 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_002053_050 Hb_002053_050 Hb_000505_080--Hb_002053_050 Hb_000866_340--Hb_001221_200 Hb_000977_290 Hb_000977_290 Hb_000866_340--Hb_000977_290 Hb_015531_030 Hb_015531_030 Hb_000866_340--Hb_015531_030 Hb_150651_020 Hb_150651_020 Hb_000866_340--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_000866_340--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_000866_340--Hb_004705_070 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200 Hb_004542_020--Hb_015531_030 Hb_143629_060 Hb_143629_060 Hb_004542_020--Hb_143629_060 Hb_001959_240 Hb_001959_240 Hb_004542_020--Hb_001959_240 Hb_004738_110 Hb_004738_110 Hb_004542_020--Hb_004738_110 Hb_005271_160 Hb_005271_160 Hb_004542_020--Hb_005271_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.8605 8.76614 142.245 107.061 50.186 75.7299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.50978 5.23241 9.89386 1.80791 218.089

CAGE analysis