Hb_000260_600

Information

Type -
Description -
Location Contig260: 443451-448255
Sequence    

Annotation

kegg
ID rcu:RCOM_1324340
description hypothetical protein
nr
ID XP_002520002.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Y3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27032: 443529-448295 , PASA_asmbl_27034: 447146-447304 , PASA_asmbl_27035: 447305-447657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_600 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000991_040 0.0937730999 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
3 Hb_000140_350 0.0972292744 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000890_230 0.0989236015 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
5 Hb_000322_070 0.0998488673 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
6 Hb_000009_400 0.1037132804 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
7 Hb_003617_020 0.1038368478 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
8 Hb_001016_050 0.106673106 - - drought-inducible protein [Manihot esculenta]
9 Hb_001357_040 0.1085998901 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
10 Hb_000692_150 0.1099293891 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
11 Hb_000608_260 0.1109149615 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
12 Hb_000931_020 0.114175329 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
13 Hb_000836_280 0.1144766347 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
14 Hb_004102_170 0.1169082809 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
15 Hb_001217_040 0.1174245225 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
16 Hb_005977_100 0.1176688384 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
17 Hb_000146_040 0.1180393431 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
18 Hb_005276_060 0.1188542135 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
19 Hb_004109_230 0.119682873 - - heat shock protein binding protein, putative [Ricinus communis]
20 Hb_008937_010 0.1199783141 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_600 Hb_000260_600 Hb_000991_040 Hb_000991_040 Hb_000260_600--Hb_000991_040 Hb_000140_350 Hb_000140_350 Hb_000260_600--Hb_000140_350 Hb_000890_230 Hb_000890_230 Hb_000260_600--Hb_000890_230 Hb_000322_070 Hb_000322_070 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020 Hb_000622_340 Hb_000622_340 Hb_000991_040--Hb_000622_340 Hb_000815_240 Hb_000815_240 Hb_000991_040--Hb_000815_240 Hb_008937_010 Hb_008937_010 Hb_000991_040--Hb_008937_010 Hb_000390_250 Hb_000390_250 Hb_000991_040--Hb_000390_250 Hb_000991_040--Hb_000322_070 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000208_280 Hb_000208_280 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_086639_080 Hb_086639_080 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000890_230--Hb_000331_370 Hb_000002_480 Hb_000002_480 Hb_000890_230--Hb_000002_480 Hb_012651_010 Hb_012651_010 Hb_000890_230--Hb_012651_010 Hb_000322_070--Hb_000009_400 Hb_000046_570 Hb_000046_570 Hb_000322_070--Hb_000046_570 Hb_162060_010 Hb_162060_010 Hb_000322_070--Hb_162060_010 Hb_000322_070--Hb_003617_020 Hb_008253_020 Hb_008253_020 Hb_000322_070--Hb_008253_020 Hb_000322_070--Hb_000390_250 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000009_400--Hb_000046_570 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_003617_020--Hb_005276_060 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2465 45.4823 20.5443 76.0902 32.0316 37.5821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2428 17.8784 21.6175 17.4906 27.3328

CAGE analysis