Hb_000260_630

Information

Type -
Description -
Location Contig260: 455023-461690
Sequence    

Annotation

kegg
ID vvi:100245942
description altered inheritance rate of mitochondria protein 25
nr
ID XP_012090937.1
description PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
swissprot
ID Q9UT84
description Phospholipid scramblase family protein C343.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC343.06c PE=3 SV=1
trembl
ID A0A067JG94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00580 PE=4 SV=1
Gene Ontology
ID GO:0005739
description altered inheritance rate of mitochondria protein 25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27038: 455117-461673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_630 0.0 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
2 Hb_000976_120 0.071055779 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
3 Hb_003861_060 0.0729282011 - - PREDICTED: treacle protein [Jatropha curcas]
4 Hb_000875_080 0.073076294 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
5 Hb_005271_040 0.073229767 - - PREDICTED: serine racemase [Jatropha curcas]
6 Hb_005000_170 0.0738051387 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
7 Hb_001472_100 0.0747521066 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_003207_180 0.0757318524 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
9 Hb_000905_110 0.0773157198 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
10 Hb_000336_210 0.0781873175 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
11 Hb_002163_050 0.078971226 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
12 Hb_014834_150 0.0793463441 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000049_140 0.0815686619 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
14 Hb_000373_050 0.0833762984 - - PREDICTED: protein WHI3 [Jatropha curcas]
15 Hb_001863_380 0.0842979248 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
16 Hb_008616_050 0.0859349102 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
17 Hb_007894_150 0.0870395131 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
18 Hb_018790_020 0.0873979351 - - protein kinase, putative [Ricinus communis]
19 Hb_004545_110 0.0876073768 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
20 Hb_002681_100 0.0883522061 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_630 Hb_000260_630 Hb_000976_120 Hb_000976_120 Hb_000260_630--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_000260_630--Hb_003861_060 Hb_000875_080 Hb_000875_080 Hb_000260_630--Hb_000875_080 Hb_005271_040 Hb_005271_040 Hb_000260_630--Hb_005271_040 Hb_005000_170 Hb_005000_170 Hb_000260_630--Hb_005000_170 Hb_001472_100 Hb_001472_100 Hb_000260_630--Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_003647_140 Hb_003647_140 Hb_000976_120--Hb_003647_140 Hb_002641_060 Hb_002641_060 Hb_000976_120--Hb_002641_060 Hb_014834_150 Hb_014834_150 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_003861_060--Hb_014834_150 Hb_004052_080 Hb_004052_080 Hb_003861_060--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_003861_060--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_003861_060--Hb_003513_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_000336_210 Hb_000336_210 Hb_000875_080--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000875_080--Hb_002272_050 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000297_160 Hb_000297_160 Hb_000875_080--Hb_000297_160 Hb_000875_080--Hb_005271_040 Hb_171900_090 Hb_171900_090 Hb_000875_080--Hb_171900_090 Hb_000260_470 Hb_000260_470 Hb_005271_040--Hb_000260_470 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_005271_040--Hb_002272_050 Hb_001226_150 Hb_001226_150 Hb_005000_170--Hb_001226_150 Hb_007894_150 Hb_007894_150 Hb_005000_170--Hb_007894_150 Hb_000329_800 Hb_000329_800 Hb_005000_170--Hb_000329_800 Hb_004846_220 Hb_004846_220 Hb_005000_170--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.79648 5.56558 13.7861 8.33767 8.33489 6.82398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50092 10.935 7.73794 8.65645 8.12586

CAGE analysis