Hb_000260_640

Information

Type -
Description -
Location Contig260: 462640-469806
Sequence    

Annotation

kegg
ID rcu:RCOM_1324390
description hypothetical protein
nr
ID XP_012090936.1
description PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
swissprot
ID P59278
description Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2
trembl
ID A0A067JDA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00579 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27038: 455117-461673 , PASA_asmbl_27039: 462971-466461 , PASA_asmbl_27040: 466714-469813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_640 0.0 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
2 Hb_001054_030 0.0570664517 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
3 Hb_006117_080 0.0683860353 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_002253_080 0.0739189496 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
5 Hb_000321_150 0.0760372607 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
6 Hb_000661_200 0.0761830755 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
7 Hb_003729_030 0.0776171514 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
8 Hb_002542_130 0.0786368344 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
9 Hb_052764_060 0.0788754473 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_128743_010 0.0792207151 - - RNA-binding protein, putative [Ricinus communis]
11 Hb_001277_300 0.0795536778 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
12 Hb_000544_060 0.0803643625 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_005104_010 0.0824668146 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
14 Hb_010712_090 0.0825309003 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
15 Hb_000120_660 0.0827719482 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
16 Hb_001141_370 0.0834656378 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
17 Hb_007813_030 0.0846056396 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
18 Hb_000977_120 0.0846428299 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
19 Hb_000176_100 0.0872222581 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
20 Hb_008253_030 0.0880016914 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_640 Hb_000260_640 Hb_001054_030 Hb_001054_030 Hb_000260_640--Hb_001054_030 Hb_006117_080 Hb_006117_080 Hb_000260_640--Hb_006117_080 Hb_002253_080 Hb_002253_080 Hb_000260_640--Hb_002253_080 Hb_000321_150 Hb_000321_150 Hb_000260_640--Hb_000321_150 Hb_000661_200 Hb_000661_200 Hb_000260_640--Hb_000661_200 Hb_003729_030 Hb_003729_030 Hb_000260_640--Hb_003729_030 Hb_001054_030--Hb_002253_080 Hb_001054_030--Hb_003729_030 Hb_000291_090 Hb_000291_090 Hb_001054_030--Hb_000291_090 Hb_001054_030--Hb_006117_080 Hb_001054_030--Hb_000321_150 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_000069_470 Hb_000069_470 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002267_140 Hb_002267_140 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_052764_060 Hb_052764_060 Hb_000661_200--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000661_200--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000661_200--Hb_007813_030 Hb_000062_470 Hb_000062_470 Hb_000661_200--Hb_000062_470 Hb_001959_020 Hb_001959_020 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_003729_030--Hb_000069_470 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.53139 20.2826 6.52888 7.06769 11.7524 9.90204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71645 4.50891 6.78206 5.76703 8.01045

CAGE analysis