Hb_000260_660

Information

Type -
Description -
Location Contig260: 476422-488821
Sequence    

Annotation

kegg
ID rcu:RCOM_1324430
description hypothetical protein
nr
ID XP_002520011.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AI7
description Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1
trembl
ID B9S1Z2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324430 PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein topless-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27043: 476734-488676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_660 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002217_220 0.0569357202 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
3 Hb_007765_030 0.0804209503 - - PREDICTED: neutral ceramidase [Jatropha curcas]
4 Hb_083799_010 0.087006569 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_009615_160 0.0888254197 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_005074_020 0.0905372623 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
7 Hb_006006_040 0.0928251755 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
8 Hb_011287_010 0.0933654123 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000327_250 0.0949154833 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
10 Hb_143629_100 0.0949507353 - - PREDICTED: phytochrome A [Jatropha curcas]
11 Hb_001167_050 0.0949636288 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
12 Hb_001329_200 0.0968013695 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
13 Hb_019280_010 0.0989947191 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
14 Hb_000080_110 0.1022215037 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
15 Hb_003544_030 0.103562884 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
16 Hb_000395_220 0.1039662034 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_089140_040 0.1042191326 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
18 Hb_000174_140 0.1044309868 - - JHL23J11.8 [Jatropha curcas]
19 Hb_001031_090 0.1049243732 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
20 Hb_001328_080 0.1054322241 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]

Gene co-expression network

sample Hb_000260_660 Hb_000260_660 Hb_002217_220 Hb_002217_220 Hb_000260_660--Hb_002217_220 Hb_007765_030 Hb_007765_030 Hb_000260_660--Hb_007765_030 Hb_083799_010 Hb_083799_010 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_002217_220--Hb_007765_030 Hb_011287_010 Hb_011287_010 Hb_002217_220--Hb_011287_010 Hb_000395_220 Hb_000395_220 Hb_002217_220--Hb_000395_220 Hb_002217_220--Hb_083799_010 Hb_007426_140 Hb_007426_140 Hb_002217_220--Hb_007426_140 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_083799_010--Hb_007426_140 Hb_001329_200 Hb_001329_200 Hb_009615_160--Hb_001329_200 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_009615_160--Hb_005074_020 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_000080_110 Hb_000080_110 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_005215_020 Hb_005215_020 Hb_006006_040--Hb_005215_020 Hb_000085_450 Hb_000085_450 Hb_006006_040--Hb_000085_450 Hb_006006_040--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66372 17.2437 9.17921 15.1156 7.16408 6.32133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84379 6.79149 6.43455 20.206 7.61967

CAGE analysis