Hb_000260_690

Information

Type -
Description -
Location Contig260: 524477-533456
Sequence    

Annotation

kegg
ID pop:POPTR_0005s063002
description POPTRDRAFT_558400; hypothetical protein
nr
ID KEH39057.1
description disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A072VB85
description Disease resistance protein (CC-NBS-LRR class) family protein OS=Medicago truncatula GN=MTR_2g089975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_690 0.0 - - disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
2 Hb_007333_030 0.2128008287 - - -
3 Hb_000397_120 0.2193374598 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
4 Hb_000284_100 0.2264963984 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
5 Hb_141939_010 0.2275658163 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_007810_100 0.2313782113 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
7 Hb_038011_010 0.2374860353 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
8 Hb_000189_510 0.2387018849 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
9 Hb_008247_010 0.2388611603 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_002559_040 0.239085673 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
11 Hb_003881_050 0.2409357474 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
12 Hb_000187_090 0.2427730796 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
13 Hb_011639_050 0.2430950111 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002255_070 0.244668766 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
15 Hb_000365_070 0.2459445288 - - PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]
16 Hb_024272_010 0.2462426985 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
17 Hb_001348_050 0.2467187663 - - conserved hypothetical protein [Ricinus communis]
18 Hb_104812_010 0.2473555812 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
19 Hb_010436_030 0.2475413133 - - Ribonuclease III, putative [Ricinus communis]
20 Hb_140171_010 0.2498943844 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_690 Hb_000260_690 Hb_007333_030 Hb_007333_030 Hb_000260_690--Hb_007333_030 Hb_000397_120 Hb_000397_120 Hb_000260_690--Hb_000397_120 Hb_000284_100 Hb_000284_100 Hb_000260_690--Hb_000284_100 Hb_141939_010 Hb_141939_010 Hb_000260_690--Hb_141939_010 Hb_007810_100 Hb_007810_100 Hb_000260_690--Hb_007810_100 Hb_038011_010 Hb_038011_010 Hb_000260_690--Hb_038011_010 Hb_104812_010 Hb_104812_010 Hb_007333_030--Hb_104812_010 Hb_001221_140 Hb_001221_140 Hb_007333_030--Hb_001221_140 Hb_000732_170 Hb_000732_170 Hb_007333_030--Hb_000732_170 Hb_003059_010 Hb_003059_010 Hb_007333_030--Hb_003059_010 Hb_000574_360 Hb_000574_360 Hb_007333_030--Hb_000574_360 Hb_000077_220 Hb_000077_220 Hb_007333_030--Hb_000077_220 Hb_000397_120--Hb_007810_100 Hb_013399_080 Hb_013399_080 Hb_000397_120--Hb_013399_080 Hb_000069_710 Hb_000069_710 Hb_000397_120--Hb_000069_710 Hb_003376_050 Hb_003376_050 Hb_000397_120--Hb_003376_050 Hb_000189_510 Hb_000189_510 Hb_000397_120--Hb_000189_510 Hb_000022_200 Hb_000022_200 Hb_000397_120--Hb_000022_200 Hb_000284_100--Hb_000732_170 Hb_011310_160 Hb_011310_160 Hb_000284_100--Hb_011310_160 Hb_000470_080 Hb_000470_080 Hb_000284_100--Hb_000470_080 Hb_004117_100 Hb_004117_100 Hb_000284_100--Hb_004117_100 Hb_000284_120 Hb_000284_120 Hb_000284_100--Hb_000284_120 Hb_028912_040 Hb_028912_040 Hb_000284_100--Hb_028912_040 Hb_003106_010 Hb_003106_010 Hb_141939_010--Hb_003106_010 Hb_000836_630 Hb_000836_630 Hb_141939_010--Hb_000836_630 Hb_000034_140 Hb_000034_140 Hb_141939_010--Hb_000034_140 Hb_011287_090 Hb_011287_090 Hb_141939_010--Hb_011287_090 Hb_007064_040 Hb_007064_040 Hb_141939_010--Hb_007064_040 Hb_000139_380 Hb_000139_380 Hb_141939_010--Hb_000139_380 Hb_000850_050 Hb_000850_050 Hb_007810_100--Hb_000850_050 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_090497_010 Hb_090497_010 Hb_038011_010--Hb_090497_010 Hb_073452_010 Hb_073452_010 Hb_038011_010--Hb_073452_010 Hb_048116_010 Hb_048116_010 Hb_038011_010--Hb_048116_010 Hb_038011_010--Hb_011287_090 Hb_099864_010 Hb_099864_010 Hb_038011_010--Hb_099864_010 Hb_002326_050 Hb_002326_050 Hb_038011_010--Hb_002326_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0235493 0.00243531 0.0287002 0.00800853 0.0344617 0.0418112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00671333 0 0.0407729 0.0125364 0.0113782

CAGE analysis