Hb_000260_730

Information

Type -
Description -
Location Contig260: 552100-552453
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27058: 550641-556653 , PASA_asmbl_27060: 552841-553190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_730 0.0 - - -
2 Hb_017225_030 0.1117126919 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
3 Hb_008834_010 0.1227881536 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
4 Hb_029727_010 0.1248432966 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_001856_280 0.136794694 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_001005_040 0.13719917 - - -
7 Hb_000169_100 0.137785316 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
8 Hb_035651_010 0.1379010195 - - receptor-kinase, putative [Ricinus communis]
9 Hb_002631_270 0.1379099175 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
10 Hb_005920_030 0.1412678152 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_009848_060 0.1430317331 - - unknown [Glycine max]
12 Hb_004520_010 0.1461746204 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_155423_010 0.14770562 - - -
14 Hb_043792_030 0.1493446392 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_020831_070 0.1521677989 - - hypothetical protein VITISV_027174 [Vitis vinifera]
16 Hb_002016_130 0.1536230062 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
17 Hb_003994_070 0.1597140986 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_000567_270 0.1614739647 - - hypothetical protein L484_017162 [Morus notabilis]
19 Hb_151870_010 0.1615494069 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
20 Hb_009851_090 0.1640835555 - - Protein ABIL2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_730 Hb_000260_730 Hb_017225_030 Hb_017225_030 Hb_000260_730--Hb_017225_030 Hb_008834_010 Hb_008834_010 Hb_000260_730--Hb_008834_010 Hb_029727_010 Hb_029727_010 Hb_000260_730--Hb_029727_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_001005_040 Hb_001005_040 Hb_000260_730--Hb_001005_040 Hb_000169_100 Hb_000169_100 Hb_000260_730--Hb_000169_100 Hb_002631_270 Hb_002631_270 Hb_017225_030--Hb_002631_270 Hb_017225_030--Hb_008834_010 Hb_017225_030--Hb_029727_010 Hb_017225_030--Hb_000169_100 Hb_151870_010 Hb_151870_010 Hb_017225_030--Hb_151870_010 Hb_000101_320 Hb_000101_320 Hb_008834_010--Hb_000101_320 Hb_004312_020 Hb_004312_020 Hb_008834_010--Hb_004312_020 Hb_000685_140 Hb_000685_140 Hb_008834_010--Hb_000685_140 Hb_001452_090 Hb_001452_090 Hb_008834_010--Hb_001452_090 Hb_029727_010--Hb_000169_100 Hb_029727_010--Hb_001005_040 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_029727_010--Hb_002631_270 Hb_043792_030 Hb_043792_030 Hb_001856_280--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_001856_280--Hb_019654_170 Hb_000346_050 Hb_000346_050 Hb_001856_280--Hb_000346_050 Hb_005920_030 Hb_005920_030 Hb_001856_280--Hb_005920_030 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_002016_130 Hb_002016_130 Hb_001005_040--Hb_002016_130 Hb_001005_040--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_001005_040--Hb_000567_150 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_006807_010 Hb_006807_010 Hb_000169_100--Hb_006807_010 Hb_000169_100--Hb_002631_270 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.64885 0.957195 1.72343 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.307436 5.40322 12.7803

CAGE analysis